Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DLK06_RS18880 Genome accession   NZ_CP029610
Coordinates   3847713..3848939 (+) Length   408 a.a.
NCBI ID   WP_126117775.1    Uniprot ID   A0AAE9M910
Organism   Acinetobacter pittii strain ST220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3842713..3853939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLK06_RS18845 (DLK06_18865) rimP 3843384..3843908 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  DLK06_RS18865 (DLK06_18885) secG 3844546..3844875 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  DLK06_RS18870 (DLK06_18890) tpiA 3844888..3845682 (-) 795 WP_032063691.1 triose-phosphate isomerase -
  DLK06_RS18875 (DLK06_18895) pilB 3845974..3847686 (+) 1713 WP_032070753.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DLK06_RS18880 (DLK06_18900) pilC 3847713..3848939 (+) 1227 WP_126117775.1 type II secretion system F family protein Machinery gene
  DLK06_RS18885 (DLK06_18905) pilD 3848939..3849799 (+) 861 WP_032070754.1 prepilin peptidase Machinery gene
  DLK06_RS18890 (DLK06_18910) coaE 3849801..3850397 (+) 597 WP_032070755.1 dephospho-CoA kinase -
  DLK06_RS18895 (DLK06_18915) - 3850394..3851308 (-) 915 WP_032070756.1 DMT family transporter -
  DLK06_RS18900 (DLK06_18920) rlmB 3851344..3852093 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DLK06_RS18905 (DLK06_18925) - 3852196..3852522 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  DLK06_RS18910 (DLK06_18930) - 3852599..3853909 (-) 1311 WP_032063688.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45057.48 Da        Isoelectric Point: 9.8207

>NTDB_id=294205 DLK06_RS18880 WP_126117775.1 3847713..3848939(+) (pilC) [Acinetobacter pittii strain ST220]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGSLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=294205 DLK06_RS18880 WP_126117775.1 3847713..3848939(+) (pilC) [Acinetobacter pittii strain ST220]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACAATTTTTACTAGGCAACTTGCAACA
ATGATGAAAGCAGGTGTGCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTGGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTGCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTTA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTTACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACTGGTCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCGCTAGACAGCATGCTCGATAAAGTTGCTACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTAGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.098

100

0.402
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment