Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EQW70_RS06285 Genome accession   NZ_CP035226
Coordinates   1208679..1209596 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SRCM103517     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1203679..1214596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS06270 (EQW70_06270) trpS 1204260..1205252 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  EQW70_RS06275 (EQW70_06275) oppA 1205996..1207633 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  EQW70_RS06280 (EQW70_06280) oppB 1207740..1208675 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  EQW70_RS06285 (EQW70_06285) amiD 1208679..1209596 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  EQW70_RS06290 (EQW70_06290) oppD 1209601..1210677 (+) 1077 WP_128740215.1 oligopeptide ABC transporter ATP-binding protein OppD -
  EQW70_RS06295 (EQW70_06295) oppF 1210679..1211596 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  EQW70_RS06300 (EQW70_06300) yjbB 1211703..1212920 (+) 1218 WP_128740216.1 MFS transporter -
  EQW70_RS06305 (EQW70_06305) yjbC 1213084..1213662 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  EQW70_RS06310 (EQW70_06310) spx 1213843..1214238 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=294205 EQW70_RS06285 WP_003232954.1 1208679..1209596(+) (amiD) [Bacillus subtilis strain SRCM103517]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=294205 EQW70_RS06285 WP_003232954.1 1208679..1209596(+) (amiD) [Bacillus subtilis strain SRCM103517]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGCGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment