Detailed information NTG0294206

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DLK06_RS18885
• Genome accession: NZ_CP029610
• Coordinates: 3848939..3849799 (+)
• Length: 286 a.a.
• NCBI ID: WP_032070754.1
• Uniprot ID: A0AAE9M8Y4
• Organism: Acinetobacter pittii strain ST220
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3843939..3854799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLK06_RS18865 (DLK06_18885)	secG	3844546..3844875 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
DLK06_RS18870 (DLK06_18890)	tpiA	3844888..3845682 (-)	795	WP_032063691.1	triose-phosphate isomerase	-
DLK06_RS18875 (DLK06_18895)	pilB	3845974..3847686 (+)	1713	WP_032070753.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DLK06_RS18880 (DLK06_18900)	pilC	3847713..3848939 (+)	1227	WP_126117775.1	type II secretion system F family protein	Machinery gene
DLK06_RS18885 (DLK06_18905)	pilD	3848939..3849799 (+)	861	WP_032070754.1	prepilin peptidase	Machinery gene
DLK06_RS18890 (DLK06_18910)	coaE	3849801..3850397 (+)	597	WP_032070755.1	dephospho-CoA kinase	-
DLK06_RS18895 (DLK06_18915)	-	3850394..3851308 (-)	915	WP_032070756.1	DMT family transporter	-
DLK06_RS18900 (DLK06_18920)	rlmB	3851344..3852093 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
DLK06_RS18905 (DLK06_18925)	-	3852196..3852522 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
DLK06_RS18910 (DLK06_18930)	-	3852599..3853909 (-)	1311	WP_032063688.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32128.61 Da
• Isoelectric Point: 6.4261

>NTDB_id=294206 DLK06_RS18885 WP_032070754.1 3848939..3849799(+) (pilD) [Acinetobacter pittii strain ST220]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQILLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGDCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=294206 DLK06_RS18885 WP_032070754.1 3848939..3849799(+) (pilD) [Acinetobacter pittii strain ST220]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATATTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCGATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGTTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437