Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C1M51_RS11780 Genome accession   NZ_CP029606
Coordinates   2445850..2447076 (-) Length   408 a.a.
NCBI ID   WP_129450005.1    Uniprot ID   A0A4P6GVB1
Organism   Methylibium sp. Pch-M     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2440850..2452076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1M51_RS11745 (C1M51_11670) slmA 2441248..2441910 (+) 663 WP_011828101.1 nucleoid occlusion factor SlmA -
  C1M51_RS11750 (C1M51_11675) - 2441962..2442873 (+) 912 WP_129449993.1 ATP-binding protein -
  C1M51_RS11755 (C1M51_11680) - 2442936..2443295 (+) 360 WP_242500044.1 NUDIX domain-containing protein -
  C1M51_RS11760 (C1M51_11685) - 2443318..2443512 (-) 195 WP_129449997.1 DNA gyrase inhibitor YacG -
  C1M51_RS11765 (C1M51_11690) zapD 2443532..2444284 (-) 753 WP_129449999.1 cell division protein ZapD -
  C1M51_RS11770 (C1M51_11695) coaE 2444354..2444977 (-) 624 WP_129450001.1 dephospho-CoA kinase -
  C1M51_RS11775 (C1M51_11700) pilD 2444984..2445835 (-) 852 WP_129450003.1 A24 family peptidase Machinery gene
  C1M51_RS11780 (C1M51_11705) pilC 2445850..2447076 (-) 1227 WP_129450005.1 type II secretion system F family protein Machinery gene
  C1M51_RS11785 (C1M51_11710) pilB 2447110..2448828 (-) 1719 WP_129450007.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C1M51_RS11795 (C1M51_11720) ispB 2449091..2450020 (-) 930 WP_036229611.1 octaprenyl diphosphate synthase -
  C1M51_RS11800 (C1M51_11725) rplU 2450348..2450602 (+) 255 WP_129452175.1 50S ribosomal protein L21 -
  C1M51_RS11805 (C1M51_11730) rpmA 2450629..2450886 (+) 258 WP_011828112.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44481.34 Da        Isoelectric Point: 9.5387

>NTDB_id=294057 C1M51_RS11780 WP_129450005.1 2445850..2447076(-) (pilC) [Methylibium sp. Pch-M]
MATAATASARDIKEFVFEWEGKDKNGKVVRGEMRAGGESVVSASLRRQGILVNKVKKRRMSGGKSIKPKDIAIFTRQIAT
MMRAGVPLLQSFDIVARGSTNPRVTKLLTDIRSDIETGTSLSSAFRKHPLYFDALYCNLVEAGEAAGILETLLERLATYQ
EKTLEIKRKIKSALIYPVAVLVVAFVVVAVIMIFVIPAFKEVFTSFGADLPAPTLFVMAMSEIFVSYWWLIFGVIIGGTY
FFFESWKRSEKMQKTMDRLLLKLPVFGDLIFKSAVARWTRTLATMFAAGVPLVEALDSVGGASGNAVFAEATEQIQKDVS
TGTALTTSMQATGIFPVMVLQMAAIGEESGALDHMLSKAAEFYEAEVDEAVKGLSSLLEPIIIVVLGTIIGGIVVSMYLP
IFKLGQVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=294057 C1M51_RS11780 WP_129450005.1 2445850..2447076(-) (pilC) [Methylibium sp. Pch-M]
ATGGCCACAGCAGCAACGGCTTCGGCGCGAGACATCAAGGAATTCGTCTTCGAGTGGGAAGGCAAGGACAAGAACGGCAA
GGTCGTGCGCGGCGAAATGCGGGCCGGCGGCGAGTCGGTCGTCAGCGCGTCCCTGCGCCGCCAGGGCATCCTCGTCAACA
AGGTGAAGAAGCGCCGCATGAGCGGCGGCAAGTCCATCAAGCCGAAGGACATTGCGATCTTCACGCGCCAGATCGCGACG
ATGATGCGCGCCGGCGTTCCCTTGCTGCAGTCCTTCGACATCGTCGCGCGGGGCAGCACCAACCCGCGTGTGACCAAGCT
GCTGACCGACATCCGCTCCGACATCGAGACCGGCACCAGCCTGTCGTCGGCCTTCCGCAAGCACCCGCTGTACTTCGACG
CGCTCTATTGCAACCTCGTCGAGGCCGGTGAAGCCGCGGGTATCCTGGAAACGCTGCTCGAGCGGCTGGCGACCTACCAG
GAGAAGACCCTCGAGATCAAGCGCAAGATCAAGTCGGCGCTGATCTACCCGGTGGCCGTGCTGGTGGTGGCCTTCGTGGT
CGTCGCGGTCATCATGATCTTCGTGATCCCCGCCTTCAAGGAAGTCTTCACGTCCTTCGGAGCCGACCTCCCGGCCCCGA
CGCTGTTCGTGATGGCCATGTCCGAGATCTTCGTCAGCTACTGGTGGCTGATCTTCGGCGTCATCATCGGCGGCACCTAT
TTCTTCTTCGAGTCGTGGAAGCGATCCGAGAAGATGCAGAAGACCATGGACCGGCTGCTGTTGAAGCTGCCGGTGTTCGG
TGATCTGATCTTCAAGTCGGCCGTCGCACGCTGGACGCGCACGCTCGCCACGATGTTCGCGGCCGGCGTGCCGCTGGTCG
AGGCGCTCGACTCGGTCGGCGGCGCCTCGGGCAACGCCGTGTTCGCCGAAGCGACCGAGCAGATCCAGAAGGACGTCTCC
ACCGGCACGGCACTGACCACCTCGATGCAGGCGACCGGCATCTTCCCCGTGATGGTGCTGCAGATGGCCGCCATCGGCGA
GGAATCGGGCGCCCTCGATCACATGCTGTCCAAGGCGGCCGAGTTCTACGAGGCCGAGGTCGACGAGGCCGTCAAAGGCC
TGTCGAGCCTGCTCGAGCCGATCATCATCGTCGTGCTGGGCACCATCATCGGCGGTATCGTGGTCTCGATGTACCTGCCG
ATCTTCAAGCTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6GVB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.478

98.529

0.537
  pilG Neisseria meningitidis 44/76-A

51.5

98.039

0.505
  pilG Neisseria gonorrhoeae MS11

51.5

98.039

0.505
  pilC Legionella pneumophila strain ERS1305867

51.768

97.059

0.502
  pilC Acinetobacter baylyi ADP1

48.744

97.549

0.475
  pilC Acinetobacter baumannii D1279779

48.111

97.304

0.468
  pilC Vibrio cholerae strain A1552

41.667

97.059

0.404
  pilC Vibrio campbellii strain DS40M4

40.399

98.284

0.397
  pilC Thermus thermophilus HB27

39.206

98.775

0.387

Multiple sequence alignment