Detailed information
Bioinformatically predicted
Overview
| Name | oppD | Type | Regulator |
| Locus tag | DLJ51_RS00800 | Genome accession | NZ_CP029560 |
| Coordinates | 136402..137451 (+) | Length | 349 a.a. |
| NCBI ID | WP_019771160.1 | Uniprot ID | - |
| Organism | Streptococcus sobrinus strain NIDR 6715-7 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 125476..170655 | 136402..137451 | within | 0 |
Gene organization within MGE regions
Location: 125476..170655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLJ51_RS00780 (DLJ51_00780) | rpoC | 128733..132371 (+) | 3639 | WP_109982367.1 | DNA-directed RNA polymerase subunit beta' | - |
| DLJ51_RS00785 (DLJ51_00785) | - | 132665..134329 (+) | 1665 | WP_021673621.1 | peptide ABC transporter substrate-binding protein | - |
| DLJ51_RS00790 (DLJ51_00790) | - | 134434..135348 (+) | 915 | WP_019771159.1 | ABC transporter permease | - |
| DLJ51_RS00795 (DLJ51_00795) | - | 135360..136391 (+) | 1032 | WP_109982368.1 | ABC transporter permease | - |
| DLJ51_RS00800 (DLJ51_00800) | oppD | 136402..137451 (+) | 1050 | WP_019771160.1 | ABC transporter ATP-binding protein | Regulator |
| DLJ51_RS00805 (DLJ51_00805) | amiF | 137448..138371 (+) | 924 | WP_002999065.1 | ABC transporter ATP-binding protein | Regulator |
| DLJ51_RS00810 (DLJ51_00810) | - | 138608..140293 (-) | 1686 | WP_109982369.1 | MFS transporter | - |
| DLJ51_RS00815 (DLJ51_00815) | - | 140425..140946 (+) | 522 | WP_019781803.1 | PadR family transcriptional regulator | - |
| DLJ51_RS00820 (DLJ51_00820) | - | 140959..141267 (+) | 309 | WP_019777335.1 | LlsX family protein | - |
| DLJ51_RS00830 (DLJ51_00830) | - | 141627..142193 (+) | 567 | WP_019781805.1 | TMEM175 family protein | - |
| DLJ51_RS10445 | - | 142547..142690 (-) | 144 | WP_002959475.1 | hypothetical protein | - |
| DLJ51_RS00835 (DLJ51_00835) | - | 142680..142970 (-) | 291 | WP_002997623.1 | hypothetical protein | - |
| DLJ51_RS00840 (DLJ51_00840) | - | 143175..143897 (+) | 723 | WP_019776886.1 | ABC transporter ATP-binding protein | - |
| DLJ51_RS00845 (DLJ51_00845) | - | 143902..145048 (+) | 1147 | Protein_127 | ABC transporter permease | - |
| DLJ51_RS00850 (DLJ51_00850) | - | 145272..145892 (+) | 621 | WP_002959483.1 | TetR/AcrR family transcriptional regulator | - |
| DLJ51_RS00855 (DLJ51_00855) | - | 146070..146332 (-) | 263 | Protein_129 | type II toxin-antitoxin system YafQ family toxin | - |
| DLJ51_RS00860 (DLJ51_00860) | - | 146336..146617 (-) | 282 | WP_002959487.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| DLJ51_RS00865 (DLJ51_00865) | - | 146774..147640 (-) | 867 | WP_002959489.1 | LysR family transcriptional regulator | - |
| DLJ51_RS00870 (DLJ51_00870) | - | 147751..148611 (+) | 861 | WP_002959490.1 | aldo/keto reductase | - |
| DLJ51_RS00875 (DLJ51_00875) | - | 148711..149073 (-) | 363 | WP_002959493.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| DLJ51_RS00880 (DLJ51_00880) | - | 149434..151818 (-) | 2385 | WP_019785320.1 | HAD-IC family P-type ATPase | - |
| DLJ51_RS00885 (DLJ51_00885) | - | 152038..152406 (+) | 369 | WP_019781971.1 | DUF1033 family protein | - |
| DLJ51_RS00890 (DLJ51_00890) | comGA/cglA | 152832..153779 (+) | 948 | WP_019777327.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DLJ51_RS00895 (DLJ51_00895) | comYB | 153703..154746 (+) | 1044 | WP_002959504.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DLJ51_RS00900 (DLJ51_00900) | comYC | 154743..155069 (+) | 327 | WP_019770073.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DLJ51_RS00905 (DLJ51_00905) | comYD | 155023..155457 (+) | 435 | WP_254051091.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DLJ51_RS00910 (DLJ51_00910) | comYE | 155429..155722 (+) | 294 | WP_002959510.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DLJ51_RS00915 (DLJ51_00915) | comYF | 155706..156143 (+) | 438 | WP_019781940.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DLJ51_RS00920 (DLJ51_00920) | comGG | 156121..156582 (+) | 462 | WP_019785527.1 | competence type IV pilus minor pilin ComGG | - |
| DLJ51_RS00930 (DLJ51_00930) | - | 156784..157050 (+) | 267 | WP_002959516.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DLJ51_RS00935 (DLJ51_00935) | - | 157037..157312 (+) | 276 | WP_109982370.1 | helix-turn-helix transcriptional regulator | - |
| DLJ51_RS00940 (DLJ51_00940) | comYH | 157411..158364 (+) | 954 | WP_019771347.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DLJ51_RS00945 (DLJ51_00945) | - | 158427..159623 (+) | 1197 | WP_019771614.1 | acetate kinase | - |
| DLJ51_RS00950 (DLJ51_00950) | - | 160101..161006 (+) | 906 | WP_019769860.1 | LysR family transcriptional regulator | - |
| DLJ51_RS00955 (DLJ51_00955) | - | 161184..161450 (+) | 267 | WP_002959526.1 | ACT domain-containing protein | - |
| DLJ51_RS00960 (DLJ51_00960) | - | 161462..162799 (+) | 1338 | WP_002959528.1 | PFL family protein | - |
| DLJ51_RS00965 (DLJ51_00965) | - | 163038..163337 (-) | 300 | Protein_150 | hypothetical protein | - |
| DLJ51_RS00970 (DLJ51_00970) | - | 163367..164302 (-) | 936 | WP_019773382.1 | IS30 family transposase | - |
| DLJ51_RS00975 (DLJ51_00975) | - | 164493..164924 (-) | 432 | WP_002961167.1 | MarR family transcriptional regulator | - |
| DLJ51_RS00980 (DLJ51_00980) | - | 165063..165764 (+) | 702 | WP_002961168.1 | histidine phosphatase family protein | - |
| DLJ51_RS00985 (DLJ51_00985) | - | 165751..166518 (+) | 768 | WP_002961169.1 | M15 family metallopeptidase | - |
| DLJ51_RS00990 (DLJ51_00990) | - | 166685..167269 (+) | 585 | WP_002961170.1 | glycoside hydrolase family 73 protein | - |
| DLJ51_RS00995 (DLJ51_00995) | hrcA | 167436..168470 (+) | 1035 | WP_002961171.1 | heat-inducible transcriptional repressor HrcA | - |
| DLJ51_RS01000 (DLJ51_01000) | grpE | 168490..169041 (+) | 552 | WP_019790544.1 | nucleotide exchange factor GrpE | - |
Sequence
Protein
Download Length: 349 a.a. Molecular weight: 38884.16 Da Isoelectric Point: 4.6620
>NTDB_id=293556 DLJ51_RS00800 WP_019771160.1 136402..137451(+) (oppD) [Streptococcus sobrinus strain NIDR 6715-7]
MSKEEILSVKNLHVNFHTYAGDVKAIRNVNFELYKGETLAIVGESGSGKSVTTRTLMGLSAKNAEVKGDIQFKGRSLNDL
VEKDWVDVRGNEIAMIFQDPMTSLDPTMKIWKQITEPILIHDEEMEFDQAFEIAVDLMEKVGIPNAREHANDYPHQWSGG
MRQRAVIAIALAANPEILIADEPTTALDVTIQAQILHLMKDIQKQTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGT
VDEVFYNPQHPYTWGLLGSMPTTGTQSGSLQAIPGTPPDLLNPPKGDAFAARNAFALDIDHEEEPPMFKVSDSHYAATWL
LDERAPQVTPPDFIQKRWQDWQALEGRQK
MSKEEILSVKNLHVNFHTYAGDVKAIRNVNFELYKGETLAIVGESGSGKSVTTRTLMGLSAKNAEVKGDIQFKGRSLNDL
VEKDWVDVRGNEIAMIFQDPMTSLDPTMKIWKQITEPILIHDEEMEFDQAFEIAVDLMEKVGIPNAREHANDYPHQWSGG
MRQRAVIAIALAANPEILIADEPTTALDVTIQAQILHLMKDIQKQTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGT
VDEVFYNPQHPYTWGLLGSMPTTGTQSGSLQAIPGTPPDLLNPPKGDAFAARNAFALDIDHEEEPPMFKVSDSHYAATWL
LDERAPQVTPPDFIQKRWQDWQALEGRQK
Nucleotide
Download Length: 1050 bp
>NTDB_id=293556 DLJ51_RS00800 WP_019771160.1 136402..137451(+) (oppD) [Streptococcus sobrinus strain NIDR 6715-7]
ATGTCAAAAGAAGAAATTTTAAGTGTTAAGAACCTCCACGTCAATTTCCACACCTACGCTGGGGATGTCAAGGCTATTCG
CAATGTCAATTTCGAGCTTTACAAGGGGGAAACTCTGGCCATCGTTGGCGAATCAGGTTCCGGAAAGTCCGTGACCACTC
GGACCCTCATGGGCTTGTCAGCCAAGAATGCTGAGGTCAAGGGGGACATTCAGTTCAAGGGTCGCAGTCTTAATGACCTA
GTCGAAAAAGACTGGGTGGATGTGCGTGGCAATGAGATTGCCATGATTTTCCAGGACCCCATGACGAGTCTGGATCCCAC
CATGAAGATTTGGAAGCAGATTACTGAGCCTATCCTCATTCATGATGAGGAGATGGAATTTGACCAGGCCTTTGAAATCG
CTGTTGATTTGATGGAGAAGGTTGGGATTCCTAATGCGCGTGAACACGCTAATGATTACCCCCACCAATGGTCTGGAGGA
ATGCGGCAACGGGCTGTCATTGCCATTGCCCTAGCTGCTAATCCAGAAATCCTCATTGCCGATGAACCGACAACGGCTCT
GGATGTGACCATTCAGGCACAGATTTTGCATCTGATGAAGGACATTCAAAAGCAGACCGAGAGCTCGATTATCTTTATCA
CCCATGATTTGGGTGTGGTGGCTGGCATGGCTGACCGAGTGGCTGTCATGTACGCTGGTAAGATTGTTGAGTACGGGACC
GTTGATGAGGTATTCTACAATCCTCAACACCCTTACACTTGGGGCCTGCTAGGCTCTATGCCGACAACCGGCACCCAGTC
TGGCAGCCTGCAAGCTATTCCAGGAACGCCACCAGACTTGCTCAATCCACCCAAGGGTGATGCTTTTGCGGCCAGAAATG
CCTTTGCTCTAGATATTGACCATGAGGAAGAGCCGCCAATGTTTAAGGTATCTGATAGCCACTATGCAGCCACCTGGCTC
TTGGATGAGCGAGCACCCCAAGTGACCCCGCCAGACTTTATCCAAAAACGTTGGCAAGACTGGCAAGCATTAGAAGGGAG
ACAAAAATGA
ATGTCAAAAGAAGAAATTTTAAGTGTTAAGAACCTCCACGTCAATTTCCACACCTACGCTGGGGATGTCAAGGCTATTCG
CAATGTCAATTTCGAGCTTTACAAGGGGGAAACTCTGGCCATCGTTGGCGAATCAGGTTCCGGAAAGTCCGTGACCACTC
GGACCCTCATGGGCTTGTCAGCCAAGAATGCTGAGGTCAAGGGGGACATTCAGTTCAAGGGTCGCAGTCTTAATGACCTA
GTCGAAAAAGACTGGGTGGATGTGCGTGGCAATGAGATTGCCATGATTTTCCAGGACCCCATGACGAGTCTGGATCCCAC
CATGAAGATTTGGAAGCAGATTACTGAGCCTATCCTCATTCATGATGAGGAGATGGAATTTGACCAGGCCTTTGAAATCG
CTGTTGATTTGATGGAGAAGGTTGGGATTCCTAATGCGCGTGAACACGCTAATGATTACCCCCACCAATGGTCTGGAGGA
ATGCGGCAACGGGCTGTCATTGCCATTGCCCTAGCTGCTAATCCAGAAATCCTCATTGCCGATGAACCGACAACGGCTCT
GGATGTGACCATTCAGGCACAGATTTTGCATCTGATGAAGGACATTCAAAAGCAGACCGAGAGCTCGATTATCTTTATCA
CCCATGATTTGGGTGTGGTGGCTGGCATGGCTGACCGAGTGGCTGTCATGTACGCTGGTAAGATTGTTGAGTACGGGACC
GTTGATGAGGTATTCTACAATCCTCAACACCCTTACACTTGGGGCCTGCTAGGCTCTATGCCGACAACCGGCACCCAGTC
TGGCAGCCTGCAAGCTATTCCAGGAACGCCACCAGACTTGCTCAATCCACCCAAGGGTGATGCTTTTGCGGCCAGAAATG
CCTTTGCTCTAGATATTGACCATGAGGAAGAGCCGCCAATGTTTAAGGTATCTGATAGCCACTATGCAGCCACCTGGCTC
TTGGATGAGCGAGCACCCCAAGTGACCCCGCCAGACTTTATCCAAAAACGTTGGCAAGACTGGCAAGCATTAGAAGGGAG
ACAAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| oppD | Streptococcus mutans UA159 |
79.885 |
99.713 |
0.797 |
| amiE | Streptococcus salivarius strain HSISS4 |
53.602 |
99.427 |
0.533 |
| amiE | Streptococcus thermophilus LMG 18311 |
54.464 |
96.275 |
0.524 |
| amiE | Streptococcus thermophilus LMD-9 |
54.464 |
96.275 |
0.524 |