Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | DCD74_RS08075 | Genome accession | NZ_CP029556 |
| Coordinates | 1669522..1670727 (+) | Length | 401 a.a. |
| NCBI ID | WP_407072233.1 | Uniprot ID | - |
| Organism | Solilutibacter oculi strain 83-4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1664522..1675727
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DCD74_RS08055 (DCD74_08055) | pilR | 1665062..1666519 (+) | 1458 | WP_112926855.1 | sigma-54 dependent transcriptional regulator | Regulator |
| DCD74_RS13205 (DCD74_08060) | - | 1666749..1667114 (+) | 366 | WP_112926856.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| DCD74_RS13130 (DCD74_08065) | - | 1667329..1667658 (+) | 330 | WP_112926857.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| DCD74_RS08070 (DCD74_08070) | pilB | 1667719..1669449 (+) | 1731 | WP_112926858.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DCD74_RS08075 (DCD74_08075) | pilC | 1669522..1670727 (+) | 1206 | WP_407072233.1 | type II secretion system F family protein | Machinery gene |
| DCD74_RS08080 (DCD74_08080) | - | 1670731..1671597 (+) | 867 | WP_112926860.1 | A24 family peptidase | - |
| DCD74_RS08085 (DCD74_08085) | coaE | 1671602..1672222 (+) | 621 | WP_112926861.1 | dephospho-CoA kinase | - |
| DCD74_RS08090 (DCD74_08090) | - | 1672223..1673194 (-) | 972 | WP_112926862.1 | Nudix family hydrolase | - |
Sequence
Protein
Download Length: 401 a.a. Molecular weight: 43786.75 Da Isoelectric Point: 10.0491
>NTDB_id=293490 DCD74_RS08075 WP_407072233.1 1669522..1670727(+) (pilC) [Solilutibacter oculi strain 83-4]
MPTFTWKGTDKRGTVMKGEQQAKTEALLRAELRRQGITPTQVRPKAKPLFGAAGKKISAREIAVFSRQLATMMKSGVPIV
QALEIIGSGQKNPRMGSMVNALRADIAGGSSIYEALSKYPVQFDELYRNLVKAGESAGVLETVLETIASYKENLETLKGK
IKKALFYPAMVIAVALLVSSILLIFVVPQFEEVFKSFGAELPAFTQIIVTLSKFMVSWWWLFLLVVATGIAAFIFFYKRS
LAFQHFLDRIVLKVPVIGQIMNNSAIARFARTLGVTFAAGVPLVEGLGTVAGATGNSVYEKAVYRMRDDVSVGYQVNMAM
KQVNLFPHMVVQMTAIGEEAGALDAMLIKVAEFYEQEVNNSVDALSSLIEPFVMVIIGVLVGSMVIGMYLPIFKLASVVS
G
MPTFTWKGTDKRGTVMKGEQQAKTEALLRAELRRQGITPTQVRPKAKPLFGAAGKKISAREIAVFSRQLATMMKSGVPIV
QALEIIGSGQKNPRMGSMVNALRADIAGGSSIYEALSKYPVQFDELYRNLVKAGESAGVLETVLETIASYKENLETLKGK
IKKALFYPAMVIAVALLVSSILLIFVVPQFEEVFKSFGAELPAFTQIIVTLSKFMVSWWWLFLLVVATGIAAFIFFYKRS
LAFQHFLDRIVLKVPVIGQIMNNSAIARFARTLGVTFAAGVPLVEGLGTVAGATGNSVYEKAVYRMRDDVSVGYQVNMAM
KQVNLFPHMVVQMTAIGEEAGALDAMLIKVAEFYEQEVNNSVDALSSLIEPFVMVIIGVLVGSMVIGMYLPIFKLASVVS
G
Nucleotide
Download Length: 1206 bp
>NTDB_id=293490 DCD74_RS08075 WP_407072233.1 1669522..1670727(+) (pilC) [Solilutibacter oculi strain 83-4]
ATGCCCACCTTTACCTGGAAGGGCACGGACAAGCGTGGCACGGTGATGAAGGGCGAGCAGCAGGCCAAGACCGAGGCCTT
GCTGCGTGCGGAACTGCGTCGCCAAGGCATTACCCCGACCCAGGTCCGGCCCAAGGCCAAGCCATTGTTCGGCGCCGCCG
GCAAGAAGATCAGCGCTCGAGAAATCGCAGTATTTAGTCGCCAACTGGCAACGATGATGAAATCCGGAGTACCGATCGTC
CAGGCGCTTGAGATCATCGGCAGCGGACAGAAGAACCCGCGCATGGGTAGCATGGTGAATGCATTGCGAGCTGATATTGC
AGGAGGCTCATCAATCTACGAGGCGCTGTCAAAATACCCAGTGCAATTCGATGAACTTTATCGCAACTTGGTAAAGGCTG
GCGAGAGCGCCGGCGTTTTAGAGACAGTTCTAGAAACGATCGCTAGCTATAAAGAAAATCTAGAAACCCTTAAAGGGAAA
ATAAAAAAAGCGCTTTTTTATCCTGCAATGGTCATCGCTGTTGCGCTCTTAGTTAGCTCAATCTTGTTGATATTCGTCGT
CCCACAGTTCGAAGAGGTCTTTAAAAGCTTTGGTGCAGAGTTGCCGGCATTTACGCAGATTATCGTCACTCTAAGCAAGT
TCATGGTTTCTTGGTGGTGGCTTTTCTTGCTAGTCGTCGCAACGGGCATTGCCGCATTTATATTTTTTTACAAGCGCTCG
CTTGCTTTTCAGCACTTTCTTGACCGTATAGTTCTGAAAGTGCCTGTTATCGGTCAGATAATGAATAACTCCGCGATTGC
TCGTTTTGCGCGCACGCTGGGCGTCACCTTCGCAGCAGGCGTTCCGCTGGTGGAAGGGCTGGGCACGGTAGCGGGTGCGA
CCGGCAACAGCGTCTATGAAAAGGCTGTCTATCGCATGCGCGATGACGTGTCCGTGGGTTATCAGGTCAACATGGCGATG
AAGCAGGTCAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTCGATGCCATGCT
GATCAAAGTCGCCGAATTCTATGAGCAGGAGGTCAACAATTCGGTGGACGCGCTGTCGAGCCTGATCGAGCCCTTCGTGA
TGGTCATCATCGGTGTGCTGGTTGGCAGCATGGTCATCGGCATGTATCTGCCGATCTTCAAGCTGGCCTCCGTCGTTTCC
GGCTGA
ATGCCCACCTTTACCTGGAAGGGCACGGACAAGCGTGGCACGGTGATGAAGGGCGAGCAGCAGGCCAAGACCGAGGCCTT
GCTGCGTGCGGAACTGCGTCGCCAAGGCATTACCCCGACCCAGGTCCGGCCCAAGGCCAAGCCATTGTTCGGCGCCGCCG
GCAAGAAGATCAGCGCTCGAGAAATCGCAGTATTTAGTCGCCAACTGGCAACGATGATGAAATCCGGAGTACCGATCGTC
CAGGCGCTTGAGATCATCGGCAGCGGACAGAAGAACCCGCGCATGGGTAGCATGGTGAATGCATTGCGAGCTGATATTGC
AGGAGGCTCATCAATCTACGAGGCGCTGTCAAAATACCCAGTGCAATTCGATGAACTTTATCGCAACTTGGTAAAGGCTG
GCGAGAGCGCCGGCGTTTTAGAGACAGTTCTAGAAACGATCGCTAGCTATAAAGAAAATCTAGAAACCCTTAAAGGGAAA
ATAAAAAAAGCGCTTTTTTATCCTGCAATGGTCATCGCTGTTGCGCTCTTAGTTAGCTCAATCTTGTTGATATTCGTCGT
CCCACAGTTCGAAGAGGTCTTTAAAAGCTTTGGTGCAGAGTTGCCGGCATTTACGCAGATTATCGTCACTCTAAGCAAGT
TCATGGTTTCTTGGTGGTGGCTTTTCTTGCTAGTCGTCGCAACGGGCATTGCCGCATTTATATTTTTTTACAAGCGCTCG
CTTGCTTTTCAGCACTTTCTTGACCGTATAGTTCTGAAAGTGCCTGTTATCGGTCAGATAATGAATAACTCCGCGATTGC
TCGTTTTGCGCGCACGCTGGGCGTCACCTTCGCAGCAGGCGTTCCGCTGGTGGAAGGGCTGGGCACGGTAGCGGGTGCGA
CCGGCAACAGCGTCTATGAAAAGGCTGTCTATCGCATGCGCGATGACGTGTCCGTGGGTTATCAGGTCAACATGGCGATG
AAGCAGGTCAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTCGATGCCATGCT
GATCAAAGTCGCCGAATTCTATGAGCAGGAGGTCAACAATTCGGTGGACGCGCTGTCGAGCCTGATCGAGCCCTTCGTGA
TGGTCATCATCGGTGTGCTGGTTGGCAGCATGGTCATCGGCATGTATCTGCCGATCTTCAAGCTGGCCTCCGTCGTTTCC
GGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.283 |
98.753 |
0.526 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.645 |
99.002 |
0.521 |
| pilC | Acinetobacter baylyi ADP1 |
51.25 |
99.751 |
0.511 |
| pilC | Acinetobacter baumannii D1279779 |
51 |
99.751 |
0.509 |
| pilG | Neisseria gonorrhoeae MS11 |
43.669 |
96.509 |
0.421 |
| pilG | Neisseria meningitidis 44/76-A |
43.411 |
96.509 |
0.419 |
| pilC | Vibrio cholerae strain A1552 |
38.557 |
100 |
0.387 |
| pilC | Vibrio campbellii strain DS40M4 |
38.095 |
99.501 |
0.379 |
| pilC | Thermus thermophilus HB27 |
36.275 |
100 |
0.369 |