Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DCD74_RS08055 Genome accession   NZ_CP029556
Coordinates   1665062..1666519 (+) Length   485 a.a.
NCBI ID   WP_112926855.1    Uniprot ID   A0A344J6I2
Organism   Solilutibacter oculi strain 83-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660062..1671519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCD74_RS08040 (DCD74_08040) sucD 1661185..1662060 (-) 876 WP_112926852.1 succinate--CoA ligase subunit alpha -
  DCD74_RS08045 (DCD74_08045) sucC 1662084..1663250 (-) 1167 WP_112926853.1 ADP-forming succinate--CoA ligase subunit beta -
  DCD74_RS08050 (DCD74_08050) - 1663411..1665030 (+) 1620 WP_112926854.1 PAS domain-containing sensor histidine kinase -
  DCD74_RS08055 (DCD74_08055) pilR 1665062..1666519 (+) 1458 WP_112926855.1 sigma-54 dependent transcriptional regulator Regulator
  DCD74_RS13205 (DCD74_08060) - 1666749..1667114 (+) 366 WP_112926856.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DCD74_RS13130 (DCD74_08065) - 1667329..1667658 (+) 330 WP_112926857.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DCD74_RS08070 (DCD74_08070) pilB 1667719..1669449 (+) 1731 WP_112926858.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DCD74_RS08075 (DCD74_08075) pilC 1669522..1670727 (+) 1206 WP_407072233.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 485 a.a.        Molecular weight: 52016.87 Da        Isoelectric Point: 6.4409

>NTDB_id=293488 DCD74_RS08055 WP_112926855.1 1665062..1666519(+) (pilR) [Solilutibacter oculi strain 83-4]
MTTTQCALVVDDERDIRELLVVTLTRMGLRVETAATVGAAKQQLAQQPFDFCLTDMRLPDGNGMEILAHISAHYPMTPAA
MITAFGNVEAAVEALKAGAFDFVAKPVDLHALRDLVRHALKLRSERGNAATAPAPGEKPAGAADSGAFAMMKGDSPAMDA
LRQTIAKVARSQAPVYIWGESGTGKELTARSIHELGPRAGGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKEGLFQ
AANGGTLFLDEVAELPMPMQVKLLRAIQEKKVRPVGAATEIDVDVRLLSATHKNLAKLVEEGKFRHDLYYRINVIELRVP
PLRERGNDLQPLAEGILTRLAGAHGVATPRLGTSAEQALASYAFPGNVRELENILERAMTMAEGDVIQAEDLRLPAAAAT
VPSAQHSPAPAPVPTQEATMPVESVVAEAIDIEPGKALPDAIEKMERTVIEQALVANRYNKTKTAAQLGITFRALRYKLK
KLGID

Nucleotide


Download         Length: 1458 bp        

>NTDB_id=293488 DCD74_RS08055 WP_112926855.1 1665062..1666519(+) (pilR) [Solilutibacter oculi strain 83-4]
GTGACCACAACTCAATGCGCACTGGTGGTCGATGACGAACGCGACATCCGCGAATTGCTGGTGGTGACCCTGACCCGGAT
GGGCCTGCGCGTGGAAACCGCGGCCACGGTAGGCGCGGCCAAGCAGCAGCTGGCCCAGCAGCCCTTCGATTTCTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCATGGAGATCCTTGCCCACATCAGCGCGCATTACCCGATGACCCCGGCGGCG
ATGATCACCGCGTTCGGCAACGTCGAAGCGGCGGTGGAAGCGCTGAAGGCCGGCGCGTTCGACTTTGTCGCCAAGCCGGT
CGACCTGCACGCCCTGCGCGACCTGGTGCGCCACGCGCTGAAGCTCCGCTCCGAGCGCGGCAACGCGGCCACCGCGCCCG
CCCCGGGCGAAAAGCCGGCAGGTGCGGCGGACAGTGGCGCCTTCGCGATGATGAAAGGCGACTCGCCGGCCATGGACGCG
CTGCGCCAGACCATCGCCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACATCTGGGGCGAATCCGGCACCGGCAAGGAACT
CACCGCCCGCAGCATCCACGAACTCGGCCCACGTGCCGGTGGCCCCTTCGTCCCGGTCAACTGCGGCGCGATCCCGGCCG
AGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTGGCGCCCATGCCGACAAGGAAGGCCTGTTCCAG
GCGGCGAACGGCGGCACGCTCTTTCTGGACGAGGTAGCCGAGCTGCCGATGCCGATGCAGGTCAAGCTGCTGCGCGCCAT
CCAGGAAAAGAAGGTGCGCCCGGTCGGCGCCGCCACCGAGATCGACGTCGACGTGCGCCTGCTCTCGGCCACCCACAAGA
ACCTGGCCAAGCTGGTGGAGGAAGGCAAGTTCCGCCACGACCTCTACTACCGCATCAACGTGATCGAGCTGCGCGTGCCG
CCGCTGCGCGAGCGCGGCAACGACCTGCAACCGCTGGCCGAGGGCATCCTGACCCGGCTGGCCGGCGCGCACGGCGTGGC
GACGCCGCGGCTGGGTACCTCCGCGGAACAGGCATTGGCCAGCTACGCATTTCCCGGCAACGTGCGCGAGCTGGAGAACA
TCCTGGAGCGTGCGATGACGATGGCCGAAGGCGATGTCATCCAGGCCGAGGACCTGCGGTTGCCGGCGGCAGCTGCCACC
GTGCCTTCCGCGCAACACAGCCCCGCACCTGCGCCGGTACCCACGCAGGAGGCGACCATGCCCGTTGAATCCGTCGTCGC
GGAAGCGATCGACATCGAGCCCGGCAAGGCCCTGCCCGACGCCATCGAAAAGATGGAGCGCACGGTCATCGAGCAGGCGC
TCGTGGCCAACCGCTACAACAAGACCAAGACCGCCGCCCAGCTGGGCATCACCTTCCGGGCGCTGCGCTACAAGCTCAAG
AAGCTGGGGATCGACTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(152-317)

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(442-482)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344J6I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.557

99.588

0.573
  pilR Acinetobacter baumannii strain A118

46.598

100

0.466

Multiple sequence alignment