Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DK843_RS09765 Genome accession   NZ_CP029554
Coordinates   2003304..2004527 (-) Length   407 a.a.
NCBI ID   WP_114060250.1    Uniprot ID   A0A344UH12
Organism   Chromobacterium phragmitis strain IIBBL 274-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1998304..2009527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK843_RS09735 (DK843_09735) tsaE 1999031..1999525 (+) 495 WP_114060247.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DK843_RS09740 (DK843_09740) - 1999483..2000724 (+) 1242 WP_114060248.1 N-acetylmuramoyl-L-alanine amidase -
  DK843_RS09745 (DK843_09745) yacG 2000793..2000984 (-) 192 WP_114063600.1 DNA gyrase inhibitor YacG -
  DK843_RS09750 (DK843_09750) zapD 2000990..2001748 (-) 759 WP_168191805.1 cell division protein ZapD -
  DK843_RS09755 (DK843_09755) coaE 2001785..2002399 (-) 615 WP_114073138.1 dephospho-CoA kinase -
  DK843_RS09760 (DK843_09760) pilD 2002384..2003304 (-) 921 WP_114060249.1 prepilin peptidase Machinery gene
  DK843_RS09765 (DK843_09765) pilC 2003304..2004527 (-) 1224 WP_114060250.1 type II secretion system F family protein Machinery gene
  DK843_RS09770 (DK843_09770) pilF 2004567..2006273 (-) 1707 WP_114073139.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DK843_RS09775 (DK843_09775) - 2006442..2007566 (-) 1125 WP_114073140.1 porin -
  DK843_RS09780 (DK843_09780) - 2007963..2008283 (-) 321 WP_114073141.1 ComEA family DNA-binding protein -
  DK843_RS09785 (DK843_09785) - 2008338..2009159 (-) 822 WP_114073142.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44910.64 Da        Isoelectric Point: 9.9849

>NTDB_id=293464 DK843_RS09765 WP_114060250.1 2003304..2004527(-) (pilC) [Chromobacterium phragmitis strain IIBBL 274-1]
MATTAAKKTNPGYIWEWEGKDKSGKMIRGELRAESEAVAKTQLRRQGINVAKIRRRRSGFGKKITERDITLFTRQLSTMM
RAGVPLLQAFDIAAKGHGNPAVTRMLLEVRADVETGSSLAEAFRKKPLYFDKLFCNIIAAGEAGGVLDTLLDKLATYKEK
VMAIKSKIKSALIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHYWWLIFGTLFGAIFAF
FYAFKRTPRMQEQMDRILLRVPVVGDIIRKATIARWARTLSTLFSAGVPLVEALDSVGGAAGNQVYAEATRRIQADVNTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLVIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=293464 DK843_RS09765 WP_114060250.1 2003304..2004527(-) (pilC) [Chromobacterium phragmitis strain IIBBL 274-1]
ATGGCGACCACGGCGGCCAAGAAGACGAATCCAGGCTACATCTGGGAATGGGAGGGCAAGGACAAGTCCGGCAAGATGAT
ACGGGGCGAGTTGCGGGCCGAGTCGGAAGCCGTCGCCAAGACCCAGTTGCGCCGGCAAGGCATCAACGTGGCCAAGATCC
GCCGCCGGCGCAGCGGCTTCGGCAAGAAGATCACCGAGAGGGACATCACGCTGTTCACCCGCCAGCTGTCGACGATGATG
CGCGCCGGCGTGCCCTTGCTGCAGGCATTCGACATCGCGGCCAAGGGCCACGGCAATCCTGCCGTGACTCGGATGTTGCT
GGAGGTGAGGGCGGACGTGGAAACGGGCTCTTCGCTGGCCGAGGCTTTCCGCAAGAAGCCATTGTATTTCGACAAGCTGT
TCTGCAACATCATCGCCGCCGGCGAGGCGGGCGGCGTGCTGGATACCTTGCTGGACAAGCTGGCCACCTACAAGGAAAAG
GTGATGGCCATCAAGTCCAAGATCAAGTCGGCGCTGATTTACCCCTCCGCCATCGTCGGCACGGCTTTCATCATCACCGC
GGTGATCATGATCTACGTAATCCCGGCATTCAAAGACTTATTCTCCAGTTTCGGCGCCAATCTGCCGGCGCCTACGCTGT
TCGTGATCTGGCTGTCGGACCAATTCGTGCATTACTGGTGGCTGATTTTCGGAACCCTCTTCGGCGCGATCTTCGCCTTT
TTCTACGCGTTCAAGCGCACGCCCAGGATGCAGGAGCAGATGGATCGCATTCTGCTGCGGGTGCCGGTGGTGGGCGACAT
CATCAGAAAAGCCACCATCGCGCGCTGGGCGCGGACCTTGTCCACGCTGTTCTCCGCCGGCGTGCCGCTGGTGGAGGCGT
TGGACTCGGTCGGCGGGGCTGCCGGCAATCAGGTATACGCCGAGGCGACCCGGCGGATCCAGGCGGATGTCAATACCGGC
TCCAGCCTTAATTATTCGATGCAGCGCACCGACCTGTTTCCCAATATGGTGCTGCAGATGACCTCCATCGGCGAGGAGTC
CGGTTCGCTGGACCAGATGCTGGACAAAGTGGCCGACTTTTACGAGGAAGAAGTGGATAATGCGGTAGCCGCGCTTTCCA
GCCTGCTGGAGCCGGCGATCATGGTGATTCTGGGGATATTGATAGGCGGACTGGTGATCGCGATGTACATGCCGATTTTC
AAGATGGGTCAGGTGGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344UH12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.218

99.263

0.528
  pilC Pseudomonas stutzeri DSM 10701

52.97

99.263

0.526
  pilG Neisseria gonorrhoeae MS11

54.22

96.069

0.521
  pilG Neisseria meningitidis 44/76-A

54.22

96.069

0.521
  pilC Acinetobacter baylyi ADP1

50.614

100

0.506
  pilC Acinetobacter baumannii D1279779

48.894

100

0.489
  pilC Vibrio campbellii strain DS40M4

38.221

100

0.391
  pilC Vibrio cholerae strain A1552

36.855

100

0.369

Multiple sequence alignment