Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DKK66_RS04385 Genome accession   NZ_CP029539
Coordinates   932744..933964 (-) Length   406 a.a.
NCBI ID   WP_131355824.1    Uniprot ID   -
Organism   Aquitalea sp. USM4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 927744..938964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKK66_RS04355 (DKK66_04345) tsaE 928528..929013 (+) 486 WP_131355818.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DKK66_RS04360 (DKK66_04350) - 928974..930215 (+) 1242 WP_045845411.1 N-acetylmuramoyl-L-alanine amidase -
  DKK66_RS04365 (DKK66_04355) yacG 930270..930467 (-) 198 WP_045845412.1 DNA gyrase inhibitor YacG -
  DKK66_RS04370 (DKK66_04360) zapD 930473..931231 (-) 759 WP_045845413.1 cell division protein ZapD -
  DKK66_RS04375 (DKK66_04365) coaE 931271..931960 (-) 690 WP_370302793.1 dephospho-CoA kinase -
  DKK66_RS04380 (DKK66_04370) pilD 931872..932741 (-) 870 WP_131355821.1 A24 family peptidase Machinery gene
  DKK66_RS04385 (DKK66_04375) pilC 932744..933964 (-) 1221 WP_131355824.1 type II secretion system F family protein Machinery gene
  DKK66_RS04390 (DKK66_04380) pilF 933985..935697 (-) 1713 WP_131355826.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DKK66_RS04395 (DKK66_04385) - 935882..936952 (-) 1071 WP_131355829.1 porin -
  DKK66_RS04400 (DKK66_04390) - 937294..938691 (+) 1398 WP_131355832.1 deoxyribodipyrimidine photo-lyase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44686.60 Da        Isoelectric Point: 9.9425

>NTDB_id=293347 DKK66_RS04385 WP_131355824.1 932744..933964(-) (pilC) [Aquitalea sp. USM4]
MATVAKKVNPGFIWEWEGKDRAGKVVRGELRAETEAVAKTQLRRQGINVVKVKRRRSGFGRKITEKDITLFTRQLSTMMR
AGVPLLQAFDIAAKGHGNPAVTKMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNLIAAGETGGVLDSLLDKLATYKEKV
MAIKGKIKSAMIYPTAIVATAFIITAVIMIYVIPAFKDLFSSFGADLPAPTLIVIWLSDFFVHWWWLIFGSIFGAIFAFF
YAFKRTPKLQEQFDRILLKLPVIGDIIRKATIARWSRTLSTLFAAGVPLVEALDSVGGASGNQVYSEATKLIQNDVSAGS
SLSYSMQRTGLFPNMVLQMTSIGEESGSLDQMLDKIADFYEEEVDNAVASLSSLLEPAIMVILGVLIGGLVIAMYMPIFK
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=293347 DKK66_RS04385 WP_131355824.1 932744..933964(-) (pilC) [Aquitalea sp. USM4]
ATGGCAACCGTGGCGAAAAAGGTAAACCCGGGTTTTATCTGGGAATGGGAAGGCAAGGATCGTGCAGGAAAGGTAGTGCG
CGGGGAATTACGTGCCGAAACCGAGGCTGTCGCCAAGACCCAGTTGCGTCGGCAGGGGATTAATGTCGTCAAGGTCAAGC
GCCGTCGCAGTGGTTTTGGCCGCAAGATTACCGAAAAAGACATTACGCTGTTTACCCGTCAGCTTTCCACCATGATGCGG
GCGGGTGTGCCCTTGCTGCAGGCATTTGATATTGCCGCCAAAGGGCATGGCAATCCAGCAGTTACCAAAATGCTGCTTGA
AGTACGCGCGGATGTGGAAACTGGCCTGTCTCTGGCAGAGGCCTTTCGCAAGCGTCCACTGTATTTCGACAAGTTGTTCT
GCAATTTGATTGCAGCAGGTGAAACCGGTGGTGTACTGGACTCCTTGCTGGACAAGCTGGCTACCTACAAAGAAAAGGTG
ATGGCGATCAAGGGCAAGATCAAGTCCGCCATGATCTACCCCACCGCCATTGTGGCGACGGCCTTCATCATTACCGCCGT
GATCATGATTTACGTGATTCCGGCATTCAAGGATCTGTTCTCCAGCTTTGGCGCTGATTTGCCTGCACCAACCCTGATTG
TCATCTGGTTGTCCGACTTCTTTGTTCATTGGTGGTGGCTGATATTCGGCAGCATTTTCGGTGCAATCTTTGCGTTTTTC
TATGCATTCAAGCGTACGCCCAAGTTGCAGGAACAGTTTGACCGCATCCTGCTGAAGCTCCCGGTCATCGGTGACATCAT
TCGTAAGGCCACCATCGCACGTTGGTCGCGTACTTTGTCTACCTTGTTCGCCGCGGGTGTCCCGCTGGTTGAAGCGCTGG
ATTCTGTCGGTGGCGCATCGGGTAACCAGGTATATAGCGAGGCGACAAAACTGATTCAAAACGATGTCAGTGCCGGTTCC
AGCCTGAGCTATTCCATGCAGCGTACCGGGCTGTTTCCCAATATGGTGCTGCAGATGACCTCCATTGGTGAGGAGTCGGG
TTCACTCGACCAGATGCTGGACAAGATTGCGGATTTTTATGAAGAAGAAGTGGATAACGCTGTTGCTTCGCTTTCCAGCC
TGTTGGAACCCGCCATCATGGTGATTCTGGGTGTACTGATTGGCGGCCTGGTTATTGCCATGTATATGCCGATTTTCAAA
ATGGGCCAGGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.333

99.754

0.532
  pilC Legionella pneumophila strain ERS1305867

53.465

99.507

0.532
  pilG Neisseria gonorrhoeae MS11

54.476

96.305

0.525
  pilG Neisseria meningitidis 44/76-A

54.476

96.305

0.525
  pilC Acinetobacter baylyi ADP1

49.754

100

0.498
  pilC Acinetobacter baumannii D1279779

49.268

100

0.498
  pilC Vibrio campbellii strain DS40M4

39.268

100

0.397
  pilC Vibrio cholerae strain A1552

38.155

98.768

0.377
  pilC Thermus thermophilus HB27

37.093

98.276

0.365

Multiple sequence alignment