Detailed information NTG0293346

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DKK66_RS04380
• Genome accession: NZ_CP029539
• Coordinates: 931872..932741 (-)
• Length: 289 a.a.
• NCBI ID: WP_131355821.1
• Uniprot ID: -
• Organism: Aquitalea sp. USM4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 926872..937741

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKK66_RS04345 (DKK66_04335)	-	926909..927373 (+)	465	WP_052693773.1	GNAT family N-acetyltransferase	-
DKK66_RS04350 (DKK66_04340)	queG	927430..928521 (-)	1092	WP_131355815.1	tRNA epoxyqueuosine(34) reductase QueG	-
DKK66_RS04355 (DKK66_04345)	tsaE	928528..929013 (+)	486	WP_131355818.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
DKK66_RS04360 (DKK66_04350)	-	928974..930215 (+)	1242	WP_045845411.1	N-acetylmuramoyl-L-alanine amidase	-
DKK66_RS04365 (DKK66_04355)	yacG	930270..930467 (-)	198	WP_045845412.1	DNA gyrase inhibitor YacG	-
DKK66_RS04370 (DKK66_04360)	zapD	930473..931231 (-)	759	WP_045845413.1	cell division protein ZapD	-
DKK66_RS04375 (DKK66_04365)	coaE	931271..931960 (-)	690	WP_370302793.1	dephospho-CoA kinase	-
DKK66_RS04380 (DKK66_04370)	pilD	931872..932741 (-)	870	WP_131355821.1	A24 family peptidase	Machinery gene
DKK66_RS04385 (DKK66_04375)	pilC	932744..933964 (-)	1221	WP_131355824.1	type II secretion system F family protein	Machinery gene
DKK66_RS04390 (DKK66_04380)	pilF	933985..935697 (-)	1713	WP_131355826.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DKK66_RS04395 (DKK66_04385)	-	935882..936952 (-)	1071	WP_131355829.1	porin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31653.74 Da
• Isoelectric Point: 7.6107

>NTDB_id=293346 DKK66_RS04380 WP_131355821.1 931872..932741(-) (pilD) [Aquitalea sp. USM4]
MAEIGSLLSANAGLLVVMVLLLGLLVGSFLNVVIHRLPVMMERGWQRECDRYLGRDVQDAERYNLLVPASHCPGCKQDVK
AWQNIPLLSYALLRGRCAHCGTGISWRYPAVELLTGLLFASVAWRFGWGLPMLGYLLLTAVLVALTFIDADTQLLPDDLT
LPLVWAGLLFNLYTGVVPLEDAVIGAVAGYLSLWLVYWLFKLCTGKEGMGYGDFKLLAAFGAWLGWSMLPLIILLSSLVG
AVVGIVLMLLSRIGRGQALPFGPYLAAAGWIALLWGKQIVSWYLGSYVH

Nucleotide

• Length: 870 bp

>NTDB_id=293346 DKK66_RS04380 WP_131355821.1 931872..932741(-) (pilD) [Aquitalea sp. USM4]
ATGGCGGAAATCGGAAGTCTGCTGTCAGCAAATGCTGGCTTGCTGGTGGTGATGGTGTTGTTGCTGGGCTTGTTGGTGGG
TAGTTTCCTGAATGTGGTCATTCACCGTTTGCCGGTCATGATGGAACGTGGCTGGCAGCGGGAATGTGATCGATATCTCG
GTCGGGATGTCCAGGATGCTGAGCGATACAATCTGCTGGTGCCTGCATCGCATTGTCCTGGCTGCAAGCAGGATGTGAAG
GCCTGGCAGAACATCCCCTTGCTCAGTTATGCCTTGCTGCGCGGTCGCTGCGCGCACTGTGGCACCGGCATCAGCTGGCG
CTATCCGGCAGTTGAGTTGCTCACCGGCCTGTTGTTTGCTTCCGTTGCATGGCGCTTTGGCTGGGGCCTGCCCATGTTGG
GTTACTTGCTGTTGACGGCAGTGCTGGTCGCACTCACCTTCATTGATGCGGATACCCAGCTGTTACCTGATGATCTGACC
CTGCCCTTGGTGTGGGCTGGCTTGTTATTCAATCTGTACACCGGAGTCGTTCCGCTTGAGGATGCGGTGATCGGTGCAGT
AGCAGGCTACCTGAGCTTATGGTTGGTGTACTGGCTTTTCAAGTTATGTACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGTTGCTGGCAGCTTTCGGTGCCTGGCTGGGCTGGAGCATGTTGCCACTGATCATTTTGCTTTCCTCCCTGGTAGGG
GCTGTGGTTGGCATTGTCCTGATGTTGCTGTCGCGTATTGGCCGTGGCCAGGCATTGCCGTTTGGTCCATATCTGGCTGC
TGCCGGGTGGATTGCACTGCTATGGGGCAAGCAAATCGTCAGTTGGTATCTGGGTAGCTATGTCCATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	54.671	100	0.547
pilD	Acinetobacter baumannii D1279779	53.31	99.308	0.529
pilD	Acinetobacter nosocomialis M2	53.31	99.308	0.529
pilD	Vibrio cholerae strain A1552	53.957	96.194	0.519
pilD	Vibrio campbellii strain DS40M4	53.069	95.848	0.509