Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DF184_RS00825 Genome accession   NZ_CP029398
Coordinates   127865..128260 (+) Length   131 a.a.
NCBI ID   WP_024401516.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 122865..133260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS00795 (DF184_00795) pepA 123546..124607 (-) 1062 WP_024409100.1 glutamyl aminopeptidase -
  DF184_RS00800 (DF184_00800) - 124754..125038 (+) 285 WP_024409101.1 DUF4651 domain-containing protein -
  DF184_RS00805 (DF184_00805) - 125035..125355 (+) 321 WP_014735298.1 thioredoxin family protein -
  DF184_RS00810 (DF184_00810) - 125400..126356 (+) 957 WP_024409102.1 DUF1002 domain-containing protein -
  DF184_RS00815 (DF184_00815) ytpR 126375..126998 (+) 624 WP_024409103.1 YtpR family tRNA-binding protein -
  DF184_RS00820 (DF184_00820) - 127031..127810 (-) 780 WP_024401515.1 DUF2785 domain-containing protein -
  DF184_RS00825 (DF184_00825) ssbA 127865..128260 (+) 396 WP_024401516.1 single-stranded DNA-binding protein Machinery gene
  DF184_RS00835 (DF184_00835) groES 128821..129102 (+) 282 WP_014637330.1 co-chaperone GroES -
  DF184_RS00840 (DF184_00840) groL 129113..130735 (+) 1623 WP_109371029.1 chaperonin GroEL -
  DF184_RS00845 (DF184_00845) rpsL 130967..131380 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  DF184_RS00850 (DF184_00850) rpsG 131397..131867 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14907.81 Da        Isoelectric Point: 5.0026

>NTDB_id=292262 DF184_RS00825 WP_024401516.1 127865..128260(+) (ssbA) [Streptococcus suis strain HN105]
MYNKVILIGRLTAQPELTQTPTGKNLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGNNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=292262 DF184_RS00825 WP_024401516.1 127865..128260(+) (ssbA) [Streptococcus suis strain HN105]
ATGTATAATAAAGTTATTTTGATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACTATCGCAGTCAATCGCCGATTCAAGACTGAAAATGGTGAGCGTGAAGCAGACTTTCTTAATGTTATTTTTT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAATAACCACTATGTGACAGAGATTCTAGGCCAATCTTTCCAATTACTAGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCAGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

73.282

100

0.733
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382

Multiple sequence alignment