Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DGN21_RS15060 Genome accession   NZ_CP029263
Coordinates   3583743..3584996 (+) Length   417 a.a.
NCBI ID   WP_104608920.1    Uniprot ID   A0AB73GWG0
Organism   Xanthomonas sp. MLO165     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3578743..3589996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGN21_RS15040 (DGN21_15400) pilR 3578954..3580348 (+) 1395 WP_016901261.1 sigma-54 dependent transcriptional regulator Regulator
  DGN21_RS15045 (DGN21_15405) pilB 3580569..3582305 (-) 1737 WP_126966294.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DGN21_RS20320 (DGN21_15415) - 3582937..3583389 (-) 453 WP_104600101.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DGN21_RS15060 (DGN21_15420) pilC 3583743..3584996 (+) 1254 WP_104608920.1 type II secretion system F family protein Machinery gene
  DGN21_RS15065 (DGN21_15425) - 3585004..3585867 (+) 864 WP_016849610.1 A24 family peptidase -
  DGN21_RS15070 (DGN21_15430) coaE 3585881..3586504 (+) 624 WP_126966295.1 dephospho-CoA kinase -
  DGN21_RS15075 (DGN21_15435) - 3586604..3586819 (+) 216 Protein_2971 SymE family type I addiction module toxin -
  DGN21_RS15080 (DGN21_15440) - 3586864..3588198 (-) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  DGN21_RS15085 (DGN21_15445) - 3588191..3588868 (-) 678 WP_006448355.1 response regulator transcription factor -
  DGN21_RS15090 (DGN21_15450) - 3588900..3589370 (-) 471 WP_064485041.1 hypothetical protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45513.71 Da        Isoelectric Point: 10.0346

>NTDB_id=291468 DGN21_RS15060 WP_104608920.1 3583743..3584996(+) (pilC) [Xanthomonas sp. MLO165]
MAATSGTLKSKPGGKASQLQVYVWEGSDRRGVKMKGEQSARNVNLLRAELRRQGITPSIVKPKPKPLFGETGKKITPKDI
AFFSRQMATMMKSGVPIVGALEIIGSGHKNPRMRNLVGQVRTDIEGGSSLYEAMSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENIEALKGKIKKALFYPAMVIAVAIIVSAILLVFVVPQFEDVFKGFGAELPAFTQLIVSASRFMVAYWWLI
LFTSIGCVVAFLYAYKRSLRLQHLIDRLTLKVPVIGQIMHNSSIARFSRTTAVTFKAGVPLVEALGIVAGATGNAVYEDA
VLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPLIMVFIGTIVG
GMVIGMYLPIFKLASVV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=291468 DGN21_RS15060 WP_104608920.1 3583743..3584996(+) (pilC) [Xanthomonas sp. MLO165]
ATGGCAGCAACAAGCGGCACTCTCAAAAGCAAACCGGGCGGCAAGGCAAGCCAGCTACAAGTCTATGTGTGGGAAGGCTC
CGATCGTCGTGGCGTCAAGATGAAGGGCGAACAGAGCGCGCGTAACGTCAACCTGCTGCGAGCCGAGTTGCGCCGCCAGG
GGATCACCCCAAGTATAGTCAAACCTAAACCGAAACCCTTGTTTGGCGAGACTGGCAAAAAAATCACGCCGAAAGACATT
GCCTTCTTTAGTAGACAGATGGCGACAATGATGAAGTCAGGCGTACCTATAGTCGGCGCGCTGGAAATCATAGGAAGCGG
ACACAAGAATCCGCGCATGCGCAATTTGGTGGGTCAAGTTAGAACCGACATCGAAGGCGGCTCATCGCTCTATGAGGCCA
TGAGCAAACACCCGGTTCAATTTGACGAGCTATATAGAAACCTAGTCAAAGCCGGCGAAGGCGCGGGCGTACTTGAAACG
GTCCTCGATACCGTTGCGACTTACAAAGAAAATATTGAAGCACTCAAAGGAAAAATAAAAAAAGCGCTTTTTTACCCTGC
CATGGTTATTGCAGTAGCTATCATAGTGAGCGCGATTCTATTAGTATTTGTAGTACCCCAATTTGAGGACGTCTTTAAAG
GGTTTGGCGCTGAACTACCTGCATTTACTCAGCTAATAGTATCCGCATCGCGCTTTATGGTCGCTTATTGGTGGCTAATA
CTTTTCACGAGCATAGGATGCGTCGTAGCATTTTTGTACGCTTACAAGCGCTCACTTCGCCTACAACACCTGATAGATAG
GCTCACTCTCAAAGTGCCCGTCATAGGGCAAATAATGCACAACAGCTCAATTGCGCGCTTCTCAAGAACGACGGCGGTGA
CCTTTAAGGCCGGCGTTCCGCTAGTGGAGGCTCTCGGCATTGTAGCCGGAGCTACTGGCAATGCCGTTTATGAGGACGCC
GTTCTGCGTATGCGGGACGATGTTTCAGTGGGTTATCCGGTCAATATGGCCATGAAACAGGTAAATTTATTTCCACACAT
GGTCATCCAAATGACAGCGATCGGCGAAGAAGCGGGTGCGCTAGACGCCATGCTCTTCAAAGTGGCCGAGTATTACGAGC
AAGAAGTCAATAATGCCGTGGATGCCTTGAGCAGTTTACTTGAGCCTCTGATTATGGTCTTTATTGGAACAATCGTTGGC
GGAATGGTTATCGGCATGTATCTACCAATCTTCAAACTCGCCTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.846

96.643

0.52
  pilC Legionella pneumophila strain ERS1305867

53.634

95.683

0.513
  pilC Acinetobacter baylyi ADP1

52.97

96.882

0.513
  pilC Acinetobacter baumannii D1279779

51.733

96.882

0.501
  pilG Neisseria gonorrhoeae MS11

43.069

96.882

0.417
  pilG Neisseria meningitidis 44/76-A

42.822

96.882

0.415
  pilC Vibrio cholerae strain A1552

41.872

97.362

0.408
  pilC Vibrio campbellii strain DS40M4

40.299

96.403

0.388
  pilC Thermus thermophilus HB27

39.348

95.683

0.376

Multiple sequence alignment