Detailed information NTG0291466

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DGN21_RS15040
• Genome accession: NZ_CP029263
• Coordinates: 3578954..3580348 (+)
• Length: 464 a.a.
• NCBI ID: WP_016901261.1
• Uniprot ID: -
• Organism: Xanthomonas sp. MLO165
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3573954..3585348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DGN21_RS15025 (DGN21_15385)	sucD	3574847..3575722 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
DGN21_RS15030 (DGN21_15390)	sucC	3575747..3576916 (-)	1170	WP_039519379.1	ADP-forming succinate--CoA ligase subunit beta	-
DGN21_RS15035 (DGN21_15395)	-	3577148..3578761 (+)	1614	WP_016901263.1	HAMP domain-containing sensor histidine kinase	-
DGN21_RS15040 (DGN21_15400)	pilR	3578954..3580348 (+)	1395	WP_016901261.1	sigma-54 dependent transcriptional regulator	Regulator
DGN21_RS15045 (DGN21_15405)	pilB	3580569..3582305 (-)	1737	WP_126966294.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DGN21_RS20320 (DGN21_15415)	-	3582937..3583389 (-)	453	WP_104600101.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
DGN21_RS15060 (DGN21_15420)	pilC	3583743..3584996 (+)	1254	WP_104608920.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50204.60 Da
• Isoelectric Point: 6.5112

>NTDB_id=291466 DGN21_RS15040 WP_016901261.1 3578954..3580348(+) (pilR) [Xanthomonas sp. MLO165]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=291466 DGN21_RS15040 WP_016901261.1 3578954..3580348(+) (pilR) [Xanthomonas sp. MLO165]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCTTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTGGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTAGGCAAGGAGCTGGTCGCGCGCACCATCCACGAACAGGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCACATGCCGACAAGCCAGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
GTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAAAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGGGGCGACCTTCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTATGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACACCGGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTGGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTATAAATTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	48.922	100	0.489