Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BTJ40_RS16840 Genome accession   NZ_CP029064
Coordinates   3831461..3832675 (+) Length   404 a.a.
NCBI ID   WP_108734180.1    Uniprot ID   -
Organism   Microbulbifer sp. A4B17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3826461..3837675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTJ40_RS16825 (BTJ40_16825) - 3827423..3828598 (-) 1176 WP_108734177.1 serine hydrolase -
  BTJ40_RS16830 (BTJ40_16830) - 3828688..3829167 (-) 480 WP_108734178.1 pilin -
  BTJ40_RS16835 (BTJ40_16835) pilB 3829584..3831296 (+) 1713 WP_108734179.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BTJ40_RS16840 (BTJ40_16840) pilC 3831461..3832675 (+) 1215 WP_108734180.1 type II secretion system F family protein Machinery gene
  BTJ40_RS16845 (BTJ40_16845) pilD 3832681..3833565 (+) 885 WP_108734181.1 A24 family peptidase Machinery gene
  BTJ40_RS16850 (BTJ40_16850) coaE 3833671..3834279 (+) 609 WP_108734182.1 dephospho-CoA kinase -
  BTJ40_RS16855 (BTJ40_16855) yacG 3834332..3834547 (+) 216 WP_108734183.1 DNA gyrase inhibitor YacG -
  BTJ40_RS16860 (BTJ40_16860) mutT 3834874..3835272 (-) 399 WP_108734184.1 8-oxo-dGTP diphosphatase MutT -
  BTJ40_RS16865 (BTJ40_16865) argJ 3835282..3836484 (-) 1203 WP_108734185.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43369.11 Da        Isoelectric Point: 9.2992

>NTDB_id=289800 BTJ40_RS16840 WP_108734180.1 3831461..3832675(+) (pilC) [Microbulbifer sp. A4B17]
MANAAAVTYIYKGIDSKGAKVEGEISGTSPALIKAQLRKQGIIANKVQKKPKPLFGGGKGKVKPADIAIFTRQMATMMKA
GVPLVQSFDIVADGSDNQALKELILKIREEVASGTGFSESLRKHPVYFDDLFCNLVASGEQSGALETMLDRIATYKEKTE
SLKAKIKKAMTYPIAVVVVAVIVTSILLIKVVPQFAQTFAGFGADLPAFTQLVVNISDWMQANWFFALLAVVAIISGTIE
IKKRNKKVAEAFDRLMLRLPILGTITYNSIAARFARTMSTTFAAGVPLIDALKSVAGATGNCVYEEATLKIRDSVATGVP
LNLAMRQSGLYPTMLIQMTAIGEESGALDEMLGKAADFYEEAVDNLVDNLTTLLEPMIMAVLGILVGGLMVAMYLPIFNL
GAVI

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=289800 BTJ40_RS16840 WP_108734180.1 3831461..3832675(+) (pilC) [Microbulbifer sp. A4B17]
ATGGCCAACGCCGCAGCAGTAACATATATCTATAAAGGTATAGACAGTAAGGGCGCGAAGGTCGAGGGTGAAATCAGTGG
AACTAGCCCTGCACTAATCAAAGCCCAACTTCGTAAGCAGGGTATTATTGCCAACAAGGTGCAAAAGAAGCCAAAACCCC
TTTTTGGCGGTGGCAAGGGTAAGGTTAAACCTGCGGATATTGCTATTTTTACACGTCAAATGGCAACAATGATGAAAGCG
GGAGTACCCCTGGTTCAAAGCTTTGACATAGTTGCAGATGGCTCTGATAACCAAGCACTAAAGGAGCTTATTTTAAAAAT
TCGCGAAGAAGTCGCCTCCGGTACAGGTTTCTCCGAATCCCTGCGCAAACATCCTGTTTATTTCGATGATCTATTTTGCA
ACCTAGTCGCCTCCGGTGAGCAGTCTGGCGCTCTGGAGACTATGCTGGACAGGATCGCCACCTATAAGGAAAAGACAGAG
TCCCTTAAAGCAAAAATCAAGAAAGCAATGACTTACCCTATTGCAGTGGTTGTTGTAGCCGTAATCGTTACATCAATCCT
CTTGATTAAAGTGGTACCACAATTTGCACAAACCTTCGCCGGTTTTGGTGCTGACCTACCTGCGTTTACTCAGTTAGTAG
TAAACATTTCTGATTGGATGCAAGCAAACTGGTTTTTTGCATTGCTGGCTGTAGTTGCAATCATCTCAGGCACGATTGAA
ATAAAAAAGCGCAACAAAAAAGTAGCAGAGGCTTTTGATAGACTCATGCTTCGTCTACCAATACTTGGCACGATTACATA
CAACTCAATTGCCGCCCGCTTTGCTAGAACCATGTCTACCACTTTTGCTGCCGGTGTCCCTCTAATTGACGCCCTCAAAT
CTGTTGCTGGAGCAACCGGTAACTGCGTGTACGAAGAAGCCACACTAAAAATTCGGGATTCCGTTGCCACCGGCGTTCCC
TTGAATCTGGCGATGCGCCAGTCAGGGCTATACCCAACCATGCTTATCCAAATGACAGCCATTGGTGAAGAATCTGGGGC
TCTCGATGAAATGCTTGGAAAAGCTGCCGATTTTTATGAAGAGGCAGTAGATAATTTAGTAGATAACCTTACCACCCTAC
TAGAACCAATGATTATGGCCGTCCTGGGTATTTTGGTTGGCGGTCTAATGGTGGCCATGTATCTACCTATCTTCAACCTG
GGAGCTGTTATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.889

98.02

0.626
  pilC Acinetobacter baylyi ADP1

60.705

98.267

0.597
  pilC Acinetobacter baumannii D1279779

59.296

98.515

0.584
  pilC Legionella pneumophila strain ERS1305867

57.035

98.515

0.562
  pilG Neisseria gonorrhoeae MS11

44.081

98.267

0.433
  pilG Neisseria meningitidis 44/76-A

43.829

98.267

0.431
  pilC Vibrio campbellii strain DS40M4

42.965

98.515

0.423
  pilC Vibrio cholerae strain A1552

42.929

98.02

0.421
  pilC Thermus thermophilus HB27

36.124

100

0.374

Multiple sequence alignment