Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EJF26_RS08030 Genome accession   NZ_CP034442
Coordinates   1592162..1593928 (+) Length   588 a.a.
NCBI ID   WP_000860005.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587162..1598928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS08005 tnpA 1587425..1587940 (+) 516 Protein_1563 IS200/IS605 family transposase -
  EJF26_RS08015 galU 1588310..1589209 (-) 900 WP_000811027.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EJF26_RS08020 - 1589231..1590247 (-) 1017 WP_000745018.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  EJF26_RS08025 - 1590454..1592160 (+) 1707 WP_000904374.1 ABC transporter ATP-binding protein -
  EJF26_RS08030 rcrQ 1592162..1593928 (+) 1767 WP_000860005.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS08035 - 1594064..1594753 (+) 690 WP_000124765.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  EJF26_RS08040 - 1594922..1596271 (+) 1350 WP_000018242.1 glucose-6-phosphate isomerase -
  EJF26_RS08045 gltX 1596399..1597859 (+) 1461 WP_000031072.1 glutamate--tRNA ligase -
  EJF26_RS08050 - 1597872..1598306 (+) 435 WP_000355932.1 cytidine deaminase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65410.63 Da        Isoelectric Point: 5.1266

>NTDB_id=289799 EJF26_RS08030 WP_000860005.1 1592162..1593928(+) (rcrQ) [Streptococcus oralis subsp. dentisani strain F0392]
MKTVRFFWNYFKVYKLSFVIVVLMVAIATIAQALFPVFSGQAVTELANLVLAYQNGTSELAWQSLSALMLNLALVVLTLV
VSSLIYMTFMTRVIAESTNEMRKGLFGKLSRLTVSFFDRHQDGDILSRFTSDLDNILQAFNESLVQVMSNIALYIGLIFV
MFSRNVTLALITVASTPVAFLMLVFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQNDIVAGFVERNERVRK
ATFKGRMFSGILFPVMNGMSLVNTAIVIFAGSAVLLNDPSIETTTALGLIVMFTQFSQQYYQPIIQVAASWGSLQLAFTG
ADRIQEMFDAEEEIRPQNAPAFTELREGVEISHIDFSYVPDKPILKDVSISAPKGQMIAVVGPTGSGKTTIMNLINRFYD
VDAGSICFDGKDIRDYDLDSLRSKVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVEAAAKATHIHDYIESLPDKYDTLID
DEQNIFSTGQKQLISIARTLMTDPQVLILDEATSNVDTVTESKIQHAMEAVVAGRTSFVIAHRLKTILNADQIIVLKDGE
VIERGNHHELLKLGGFYSELYHNQFVFE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=289799 EJF26_RS08030 WP_000860005.1 1592162..1593928(+) (rcrQ) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAAACCGTTCGATTTTTCTGGAATTATTTTAAAGTCTACAAGCTCTCCTTTGTCATTGTGGTTCTGATGGTTGCGAT
TGCGACGATTGCCCAAGCCCTCTTTCCAGTTTTTTCAGGTCAAGCAGTGACGGAGCTCGCTAATCTGGTTCTAGCTTATC
AAAATGGTACTTCAGAACTAGCCTGGCAAAGTTTGTCAGCTCTGATGCTGAATCTAGCTCTGGTTGTCCTCACCTTAGTA
GTATCCAGTTTGATTTACATGACCTTTATGACCCGTGTGATTGCTGAGTCAACAAATGAGATGCGTAAAGGCCTCTTTGG
CAAACTTTCCCGTTTGACGGTTTCTTTCTTTGATCGCCATCAGGATGGTGACATCCTTTCTCGCTTTACTAGTGACTTGG
ATAACATTCTTCAAGCCTTCAATGAAAGTCTAGTTCAGGTTATGAGCAATATTGCTCTTTACATCGGTTTGATTTTTGTC
ATGTTTTCAAGAAATGTGACGCTAGCCCTGATAACAGTAGCCAGCACCCCAGTGGCCTTTCTCATGTTGGTCTTCATTGT
GAAAATGGCCCGCAAGTACACCAATCTCCAGCAAAAAGAGGTTGGGAAACTCAACGCCTACATGGACGAAAGTATTTCAG
GACAGAAAGCTGTTATTGTACAAGGAATTCAAAACGACATCGTAGCAGGCTTTGTGGAGCGAAATGAGCGCGTGCGCAAG
GCAACCTTTAAAGGAAGAATGTTCTCAGGTATCCTCTTTCCAGTTATGAATGGGATGAGTTTGGTCAATACGGCCATCGT
TATTTTTGCAGGTTCTGCGGTCTTGCTGAACGATCCAAGTATCGAAACAACGACAGCCCTAGGTTTGATTGTCATGTTTA
CCCAATTTTCTCAGCAGTACTACCAGCCGATTATCCAGGTGGCTGCGAGTTGGGGGAGCCTCCAGTTGGCCTTTACTGGA
GCGGATCGTATCCAAGAAATGTTCGATGCAGAAGAAGAGATTCGCCCGCAAAATGCACCAGCCTTTACGGAATTACGAGA
AGGTGTTGAAATCAGTCACATTGATTTCTCTTATGTGCCAGATAAGCCGATTTTAAAAGATGTTAGCATTTCAGCTCCTA
AGGGGCAGATGATAGCAGTTGTCGGTCCGACTGGTTCGGGGAAAACAACCATCATGAACCTCATTAATCGTTTCTACGAT
GTGGATGCAGGCAGCATTTGCTTTGATGGAAAAGACATCCGTGACTACGACTTGGACAGTCTGCGGAGCAAGGTCGGGAT
TGTCCTGCAGGATTCGGTCTTGTTTAGTGGAACAATCCGAGACAATATCCGCTTCGGTGTGCCAGATGCCAGTCAGGAAA
TGGTCGAAGCAGCTGCCAAGGCAACTCATATTCATGACTACATCGAAAGCTTGCCTGATAAGTATGATACCCTTATTGAT
GATGAGCAAAATATCTTCTCAACTGGGCAGAAACAATTGATTTCCATCGCTCGAACCTTGATGACAGATCCTCAAGTCCT
AATCTTAGATGAAGCGACTTCCAATGTCGATACTGTAACAGAAAGCAAGATTCAGCATGCCATGGAGGCAGTAGTAGCAG
GTCGAACCAGCTTTGTCATTGCCCATCGTCTCAAGACCATCCTCAATGCCGATCAGATTATTGTCCTCAAAGATGGAGAG
GTCATTGAACGTGGAAATCATCACGAGTTGCTCAAACTCGGTGGCTTCTACTCAGAACTGTATCACAATCAATTTGTCTT
CGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-297)

ABC transporter (ABC_tran)

(365-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.661

98.81

0.362

Multiple sequence alignment