Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SAHV_RS04580 | Genome accession | NC_009782 |
| Coordinates | 926692..927117 (+) | Length | 141 a.a. |
| NCBI ID | WP_000934774.1 | Uniprot ID | Q932A8 |
| Organism | Staphylococcus aureus subsp. aureus Mu3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 917487..968568 | 926692..927117 | within | 0 |
Gene organization within MGE regions
Location: 917487..968568
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAHV_RS04485 (SAHV_0842) | sufB | 917487..918884 (+) | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| SAHV_RS04490 (SAHV_0843) | - | 918952..920001 (-) | 1050 | WP_001145728.1 | tyrosine-type recombinase/integrase | - |
| SAHV_RS04495 (SAHV_0844) | - | 920113..920292 (+) | 180 | WP_000337826.1 | hypothetical protein | - |
| SAHV_RS04500 (SAHV_0845) | - | 920272..921204 (-) | 933 | WP_000392186.1 | hypothetical protein | - |
| SAHV_RS04505 (SAHV_0846) | - | 921236..921700 (-) | 465 | WP_000524998.1 | ImmA/IrrE family metallo-endopeptidase | - |
| SAHV_RS04510 (SAHV_0847) | - | 921713..922042 (-) | 330 | WP_000429766.1 | helix-turn-helix domain-containing protein | - |
| SAHV_RS04515 (SAHV_0848) | - | 922203..922394 (+) | 192 | WP_001115060.1 | helix-turn-helix transcriptional regulator | - |
| SAHV_RS04520 | - | 922483..922626 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| SAHV_RS04525 (SAHV_0849) | - | 922616..922825 (-) | 210 | WP_000642492.1 | hypothetical protein | - |
| SAHV_RS04530 (SAHV_0850) | - | 922882..923661 (+) | 780 | WP_001148557.1 | phage antirepressor | - |
| SAHV_RS04535 (SAHV_0851) | tscA | 923662..923886 (+) | 225 | WP_000187184.1 | type II toxin-antitoxin system antitoxin TscA | - |
| SAHV_RS04540 (SAHV_0852) | - | 923926..924069 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| SAHV_RS04545 (SAHV_0853) | - | 924091..924738 (-) | 648 | WP_001838167.1 | hypothetical protein | - |
| SAHV_RS04550 (SAHV_0854) | - | 924809..925030 (+) | 222 | WP_000977378.1 | hypothetical protein | - |
| SAHV_RS04555 | - | 925023..925184 (+) | 162 | WP_000066007.1 | DUF1270 domain-containing protein | - |
| SAHV_RS04560 (SAHV_0855) | - | 925277..925579 (+) | 303 | WP_000165363.1 | DUF2482 family protein | - |
| SAHV_RS04565 | - | 925584..925844 (+) | 261 | WP_000291068.1 | DUF1108 family protein | - |
| SAHV_RS04570 (SAHV_0857) | - | 925854..926075 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| SAHV_RS04575 | - | 926068..926692 (+) | 625 | Protein_884 | DUF1071 domain-containing protein | - |
| SAHV_RS04580 (SAHV_0859) | ssb | 926692..927117 (+) | 426 | WP_000934774.1 | single-stranded DNA-binding protein | Machinery gene |
| SAHV_RS04585 (SAHV_0860) | - | 927128..927679 (+) | 552 | WP_001004505.1 | NUMOD4 domain-containing protein | - |
| SAHV_RS04590 (SAHV_0861) | - | 927680..928354 (+) | 675 | WP_001121803.1 | putative HNHc nuclease | - |
| SAHV_RS04595 (SAHV_0862) | - | 928494..928775 (-) | 282 | WP_000414755.1 | hypothetical protein | - |
| SAHV_RS04600 (SAHV_0863) | - | 928840..929571 (+) | 732 | WP_000132051.1 | helix-turn-helix domain-containing protein | - |
| SAHV_RS04605 (SAHV_0864) | - | 929584..930369 (+) | 786 | WP_000443353.1 | ATP-binding protein | - |
| SAHV_RS04610 (SAHV_0865) | - | 930366..930524 (+) | 159 | WP_000628836.1 | hypothetical protein | - |
| SAHV_RS04615 (SAHV_0866) | - | 930537..930758 (+) | 222 | WP_001123695.1 | DUF3269 family protein | - |
| SAHV_RS04620 (SAHV_0867) | - | 930768..931172 (+) | 405 | WP_000049784.1 | DUF1064 domain-containing protein | - |
| SAHV_RS04625 | - | 931177..931362 (+) | 186 | WP_001187242.1 | DUF3113 family protein | - |
| SAHV_RS04630 (SAHV_0868) | - | 931363..931734 (+) | 372 | WP_001140289.1 | SA1788 family PVL leukocidin-associated protein | - |
| SAHV_RS04635 (SAHV_0869) | - | 931735..931983 (+) | 249 | WP_001126846.1 | phi PVL orf 51-like protein | - |
| SAHV_RS04640 (SAHV_0870) | - | 931998..932246 (+) | 249 | WP_001065109.1 | DUF1024 family protein | - |
| SAHV_RS04645 (SAHV_0871) | - | 932239..932775 (+) | 537 | WP_000185680.1 | dUTPase | - |
| SAHV_RS04650 (SAHV_0872) | - | 932812..933018 (+) | 207 | WP_000195779.1 | DUF1381 domain-containing protein | - |
| SAHV_RS04655 (SAHV_0873) | - | 933015..933209 (+) | 195 | WP_000132920.1 | hypothetical protein | - |
| SAHV_RS04660 (SAHV_0874) | - | 933206..933409 (+) | 204 | WP_001072795.1 | hypothetical protein | - |
| SAHV_RS04665 (SAHV_0875) | - | 933402..933638 (+) | 237 | WP_000608273.1 | DUF7366 family protein | - |
| SAHV_RS04670 (SAHV_0876) | - | 933628..934014 (+) | 387 | WP_010924755.1 | hypothetical protein | - |
| SAHV_RS04675 (SAHV_0877) | rinB | 934014..934187 (+) | 174 | WP_000595245.1 | transcriptional activator RinB | - |
| SAHV_RS04680 | - | 934188..934334 (+) | 147 | WP_000990006.1 | hypothetical protein | - |
| SAHV_RS04685 (SAHV_0879) | - | 934349..934768 (+) | 420 | WP_000058632.1 | transcriptional regulator | - |
| SAHV_RS04690 (SAHV_0880) | - | 934955..935395 (+) | 441 | WP_001838172.1 | terminase small subunit | - |
| SAHV_RS04695 (SAHV_0881) | - | 935382..936659 (+) | 1278 | WP_000169948.1 | PBSX family phage terminase large subunit | - |
| SAHV_RS04700 (SAHV_0882) | - | 936670..938205 (+) | 1536 | WP_000921892.1 | phage portal protein | - |
| SAHV_RS04705 (SAHV_0883) | - | 938212..939207 (+) | 996 | WP_001133043.1 | minor capsid protein | - |
| SAHV_RS04710 (SAHV_0884) | - | 939280..939450 (+) | 171 | WP_000072207.1 | hypothetical protein | - |
| SAHV_RS04715 (SAHV_0885) | - | 939585..940199 (+) | 615 | WP_000354307.1 | DUF4355 domain-containing protein | - |
| SAHV_RS04720 | - | 940213..941186 (+) | 974 | Protein_913 | phage major capsid protein | - |
| SAHV_RS04725 (SAHV_0888) | - | 941208..941495 (+) | 288 | WP_001114085.1 | hypothetical protein | - |
| SAHV_RS04730 (SAHV_0889) | - | 941504..941836 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| SAHV_RS04735 (SAHV_0890) | - | 941833..942135 (+) | 303 | WP_001268314.1 | hypothetical protein | - |
| SAHV_RS04740 (SAHV_0891) | - | 942135..942482 (+) | 348 | WP_001017814.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| SAHV_RS04745 (SAHV_0892) | - | 942494..942877 (+) | 384 | WP_000188649.1 | hypothetical protein | - |
| SAHV_RS04750 (SAHV_0893) | - | 942896..943477 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| SAHV_RS04755 (SAHV_0894) | - | 943539..943904 (+) | 366 | WP_001100167.1 | tail assembly chaperone | - |
| SAHV_RS04760 (SAHV_0895) | - | 943934..944278 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| SAHV_RS04765 (SAHV_0896) | - | 944295..947759 (+) | 3465 | WP_000141453.1 | phage tail protein | - |
| SAHV_RS04770 (SAHV_0897) | - | 947772..948719 (+) | 948 | WP_000350686.1 | phage tail family protein | - |
| SAHV_RS04775 (SAHV_0898) | - | 948728..950629 (+) | 1902 | WP_000156404.1 | SGNH/GDSL hydrolase family protein | - |
| SAHV_RS04780 (SAHV_0899) | - | 950644..952554 (+) | 1911 | WP_000369014.1 | hypothetical protein | - |
| SAHV_RS04785 (SAHV_0900) | - | 952554..954377 (+) | 1824 | WP_000259629.1 | phage baseplate upper protein | - |
| SAHV_RS04790 (SAHV_0901) | - | 954377..954754 (+) | 378 | WP_000705911.1 | DUF2977 domain-containing protein | - |
| SAHV_RS04795 (SAHV_0902) | - | 954758..954931 (+) | 174 | WP_000782200.1 | XkdX family protein | - |
| SAHV_RS04800 (SAHV_0903) | - | 954972..955271 (+) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| SAHV_RS04805 (SAHV_0904) | - | 955408..957306 (+) | 1899 | WP_000524006.1 | N-acetylglucosaminidase | - |
| SAHV_RS04810 (SAHV_0905) | - | 957319..958557 (+) | 1239 | WP_000276646.1 | BppU family phage baseplate upper protein | - |
| SAHV_RS04815 (SAHV_0906) | - | 958563..958958 (+) | 396 | WP_000398870.1 | hypothetical protein | - |
| SAHV_RS04820 (SAHV_0907) | - | 959014..959451 (+) | 438 | WP_000354127.1 | phage holin | - |
| SAHV_RS04825 (SAHV_0908) | - | 959432..960877 (+) | 1446 | WP_001148136.1 | SH3 domain-containing protein | - |
| SAHV_RS04830 (SAHV_0909) | - | 961120..961272 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| SAHV_RS04835 (SAHV_0910) | - | 961343..961453 (+) | 111 | WP_001838173.1 | hypothetical protein | - |
| SAHV_RS04840 | - | 961455..961640 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| SAHV_RS04845 (SAHV_0911) | - | 961973..962605 (+) | 633 | WP_000221922.1 | Panacea domain-containing protein | - |
| SAHV_RS04850 (SAHV_0912) | - | 962598..963029 (+) | 432 | WP_000543718.1 | hypothetical protein | - |
| SAHV_RS04855 | - | 963550..963689 (+) | 140 | Protein_940 | hypothetical protein | - |
| SAHV_RS04860 (SAHV_0913) | - | 963695..964009 (-) | 315 | WP_000274029.1 | hypothetical protein | - |
| SAHV_RS04865 (SAHV_0914) | - | 964374..965414 (+) | 1041 | WP_000582326.1 | hemolysin family protein | - |
| SAHV_RS04870 (SAHV_0915) | - | 965428..966495 (+) | 1068 | WP_000267238.1 | NAD(P)H-dependent flavin oxidoreductase | - |
| SAHV_RS04880 (SAHV_0916) | - | 966880..967728 (+) | 849 | WP_000608129.1 | DUF72 domain-containing protein | - |
| SAHV_RS04885 (SAHV_0917) | - | 967741..968568 (+) | 828 | WP_000927632.1 | sulfite exporter TauE/SafE family protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15909.51 Da Isoelectric Point: 6.3751
>NTDB_id=28972 SAHV_RS04580 WP_000934774.1 926692..927117(+) (ssb) [Staphylococcus aureus subsp. aureus Mu3]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
NYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
NYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=28972 SAHV_RS04580 WP_000934774.1 926692..927117(+) (ssb) [Staphylococcus aureus subsp. aureus Mu3]
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGTGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGT
AACTATGAAAACAAAGACGGGCAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGTGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGT
AACTATGAAAACAAAGACGGGCAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.631 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
82.243 |
75.887 |
0.624 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.262 |
100 |
0.433 |
| ssbA | Streptococcus mutans UA159 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |