Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   DDE02_RS01645 Genome accession   NZ_CP029005
Coordinates   350652..351098 (+) Length   148 a.a.
NCBI ID   WP_002116696.1    Uniprot ID   A0A1C2LW36
Organism   Acinetobacter pittii strain AbW39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345652..356098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE02_RS01625 (DDE02_01635) - 347038..347925 (+) 888 WP_002117027.1 metal-dependent hydrolase -
  DDE02_RS01630 (DDE02_01640) - 348055..348645 (+) 591 WP_002117090.1 LemA family protein -
  DDE02_RS01635 (DDE02_01645) - 348670..349749 (+) 1080 WP_002116710.1 YgcG family protein -
  DDE02_RS01640 (DDE02_01650) - 349743..350303 (+) 561 WP_002116794.1 TPM domain-containing protein -
  DDE02_RS01645 (DDE02_01655) comP 350652..351098 (+) 447 WP_002116696.1 pilin Machinery gene
  DDE02_RS01650 (DDE02_01660) - 351156..352469 (+) 1314 WP_002116922.1 O-antigen ligase -
  DDE02_RS01655 (DDE02_01665) - 352575..354203 (+) 1629 WP_002116813.1 PglL family O-oligosaccharyltransferase -
  DDE02_RS01660 (DDE02_01670) bfr 354246..354710 (-) 465 WP_002117082.1 bacterioferritin -
  DDE02_RS01665 (DDE02_01675) bfd 354954..355148 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  DDE02_RS01670 (DDE02_01680) - 355251..355351 (+) 101 Protein_322 hypothetical protein -
  DDE02_RS01675 (DDE02_01685) - 355368..355751 (-) 384 WP_002116996.1 RidA family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15200.35 Da        Isoelectric Point: 4.6894

>NTDB_id=289240 DDE02_RS01645 WP_002116696.1 350652..351098(+) (comP) [Acinetobacter pittii strain AbW39]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYMVRSKVTEGLNLASSYKTTIAENAGNGAANLAVGVPNFAATENVASI
TPDGTTGKIEILYTDKAKGLTLTLTPYDGAEGGTAIAAGTVPTNQITWVCTVDSAANAKYVPSNCRGS

Nucleotide


Download         Length: 447 bp        

>NTDB_id=289240 DDE02_RS01645 WP_002116696.1 350652..351098(+) (comP) [Acinetobacter pittii strain AbW39]
ATGAATGCACAAAAAGGTTTTACTTTAATTGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCAATCGCGAT
TCCAGCTTATCAAGATTATATGGTTCGTTCAAAAGTAACAGAAGGTTTGAATTTAGCTTCATCTTATAAGACTACAATTG
CTGAAAATGCTGGAAATGGTGCTGCGAATTTAGCAGTAGGAGTTCCTAACTTTGCTGCAACAGAAAATGTAGCATCGATC
ACGCCAGATGGGACTACAGGAAAAATTGAAATTCTATATACAGATAAAGCAAAAGGTTTAACGTTAACTTTAACTCCATA
TGACGGCGCTGAAGGTGGTACAGCGATTGCTGCTGGGACTGTACCAACAAACCAAATTACTTGGGTATGTACTGTAGATT
CAGCTGCTAATGCTAAATATGTACCATCAAATTGCCGTGGTTCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-146)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2LW36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

50.307

100

0.554
  pilA Ralstonia pseudosolanacearum GMI1000

48.75

100

0.527
  pilA2 Legionella pneumophila str. Paris

51.701

99.324

0.514
  pilA2 Legionella pneumophila strain ERS1305867

51.02

99.324

0.507
  pilA/pilA1 Eikenella corrodens VA1

41.975

100

0.459
  pilA Acinetobacter baumannii strain A118

42.667

100

0.432
  pilA Pseudomonas aeruginosa PAK

36.527

100

0.412
  pilA Vibrio cholerae strain A1552

35.484

100

0.372
  pilA Vibrio cholerae C6706

35.484

100

0.372
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

35.484

100

0.372

Multiple sequence alignment