Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DBX26_RS13720 Genome accession   NZ_CP028943
Coordinates   2945383..2947122 (-) Length   579 a.a.
NCBI ID   WP_162889729.1    Uniprot ID   -
Organism   Vibrio sp. dhg     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2940383..2952122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS13700 (DBX26_13675) - 2941089..2941928 (-) 840 WP_014233144.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  DBX26_RS13705 (DBX26_13680) - 2941998..2943491 (-) 1494 WP_118119487.1 SPOR domain-containing protein -
  DBX26_RS13710 (DBX26_13685) aroB 2943544..2944644 (-) 1101 WP_118119489.1 3-dehydroquinate synthase -
  DBX26_RS13715 (DBX26_13690) aroK 2944676..2945194 (-) 519 WP_014233147.1 shikimate kinase AroK -
  DBX26_RS13720 (DBX26_13695) pilQ 2945383..2947122 (-) 1740 WP_162889729.1 type IV pilus secretin PilQ Machinery gene
  DBX26_RS13725 (DBX26_13700) pilP 2947154..2947669 (-) 516 WP_020334614.1 pilus assembly protein PilP Machinery gene
  DBX26_RS13730 (DBX26_13705) pilO 2947659..2948252 (-) 594 WP_020334615.1 type 4a pilus biogenesis protein PilO Machinery gene
  DBX26_RS13735 (DBX26_13710) pilN 2948245..2948820 (-) 576 WP_118119493.1 PilN domain-containing protein Machinery gene
  DBX26_RS13740 (DBX26_13715) pilM 2948804..2949820 (-) 1017 WP_065302946.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 63510.45 Da        Isoelectric Point: 4.3767

>NTDB_id=288747 DBX26_RS13720 WP_162889729.1 2945383..2947122(-) (pilQ) [Vibrio sp. dhg]
MIMRQGLTRTPRMLTGLLSFWLVLLFTPFALADGGMSNALKSIDFRTNKDKDAVIVVELSSPAAIVDIQRVQEGLSIDLL
NTSVKDEQLYLLDVKDFSTVVDSVEVFREVSTTRLVAHISDDYTHDYRLAGRYLEITVSKLKSDEKTPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQQLEEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLVRELPENILVIRDIIESLDIPVK
QVQIEARIVTVSEGNMDELGIRWGFSSINGNNTVGGSIENNLATIGLYEGDGEEGEGGSVGIDDFLNVNLAATNPSATSI
AFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTITFKKAVLSLKVTPQITP
DNRLVLDLSVTQDRPGQVVKTGTGEAVTIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSY
EKVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=288747 DBX26_RS13720 WP_162889729.1 2945383..2947122(-) (pilQ) [Vibrio sp. dhg]
ATGATAATGAGACAAGGACTTACACGTACACCAAGGATGCTCACTGGGCTCTTATCCTTTTGGTTAGTTTTACTTTTCAC
CCCTTTTGCTTTGGCTGATGGCGGGATGTCTAATGCGTTAAAGAGTATCGACTTTCGCACGAACAAGGACAAAGACGCGG
TGATTGTGGTGGAACTGTCTTCACCGGCTGCGATTGTCGATATTCAGCGGGTTCAGGAAGGACTGAGCATCGACTTGCTT
AATACGTCAGTGAAAGATGAGCAGTTATATCTCCTCGATGTAAAAGACTTTTCAACGGTAGTGGACAGCGTGGAAGTCTT
TCGTGAAGTCTCGACGACCCGTTTAGTCGCGCATATTAGTGATGATTACACCCATGATTACCGTTTGGCAGGGCGCTATT
TGGAAATCACGGTCAGTAAACTCAAGTCTGATGAAAAAACACCAGATAAGAGCATTTTAGAGAAAGAAGGCAAACTGATA
TCGATTAACTTCCAGGATATCCCGGTACGTAACGTCTTACAGCTCATTGCCGACTATAACCAGTTTAACCTGGTGGTATC
AGACTCGGTCGAAGGCAACCTGACACTGCGACTTGATGGTGTGCCTTGGCAGCAGGTTTTAGACATTATTCTGCAAGTAA
AAGGTTTGGATAAGCGAGTTGATGGTAATGTCATTCTTGTCGCGCCGACGGATGAACTTGACCTTCGAGAGAAGCAGCAA
CTAGAGAAGCAGCAACTTGAAGAGGAAATGGGCGAACTGTCGTCTGAAATCATCAAAGTGAATTTTGCCAAAGCATCCGA
TATTGCTGAGATGATTAATGGTGAAGGCAATATCAGCATGCTCTCTGAGCGAGGCAGCATGACGATTGATGAGCGCACTA
ACTCACTATTGGTCAGAGAATTGCCAGAGAATATCTTGGTTATTCGTGACATTATTGAGTCACTCGATATTCCGGTTAAG
CAGGTCCAAATCGAAGCGAGGATTGTCACCGTCAGTGAAGGGAACATGGATGAACTCGGCATTCGATGGGGATTCTCTTC
CATCAACGGCAATAACACCGTTGGTGGCTCGATTGAGAATAACCTCGCAACCATTGGCCTTTATGAAGGTGATGGTGAAG
AGGGCGAGGGCGGCAGTGTTGGAATTGATGATTTTCTTAACGTCAACCTGGCCGCTACTAACCCGAGCGCAACCAGCATT
GCGTTTCAGGTCGCCAAGTTGGGCTCTGACACTTTACTCGATCTGGAACTTTCTGCACTGCAGCAGGAGTCGAAAGCTGA
GATCATCTCAAGCCCTCGTTTAATCACGACTAATAAAAAACCTGCCTATATAGAACAAGGTACAGAAATTCCGTATCTAG
AATCATCATCGAGTGGTGCGACAACCATTACGTTCAAAAAAGCGGTGTTAAGTCTGAAAGTCACGCCACAAATTACCCCG
GATAACCGTCTGGTGCTGGATTTAAGTGTTACTCAGGACAGACCGGGGCAAGTGGTAAAAACGGGAACTGGCGAAGCGGT
CACAATCGACACCCAGAGAATAGGTACTCAAGTCTTAGTAAACAACGGTGAGACGGTTGTTCTTGGCGGCATTTTCCAAC
ACAGCATTACCAACTCTGTCGATAAAGTGCCATTACTCGGTGATCTGCCGTTATTAGGTGCACTTTTCCGCAGAAGTTAT
GAAAAAGTTGGTAAAAGTGAACTGCTGATTTTCGTTACACCAAAGGTTGTTATTCAATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(419-577)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

88.966

100

0.891
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

75.929

97.582

0.741
  pilQ Vibrio cholerae strain A1552

75.929

97.582

0.741
  pilQ Legionella pneumophila strain ERS1305867

41.273

94.991

0.392
  pilQ Legionella pneumophila strain Lp02

41.273

94.991

0.392
  pilQ Pseudomonas aeruginosa PAK

40.217

95.337

0.383
  pilQ Acinetobacter baumannii strain A118

37.819

100

0.383
  pilQ Acinetobacter baumannii D1279779

37.819

100

0.383
  comQ Acinetobacter baylyi ADP1

37.478

100

0.375

Multiple sequence alignment