Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   DBX26_RS13730 Genome accession   NZ_CP028943
Coordinates   2947659..2948252 (-) Length   197 a.a.
NCBI ID   WP_020334615.1    Uniprot ID   A0AAN1CWF1
Organism   Vibrio sp. dhg     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2942659..2953252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS13710 (DBX26_13685) aroB 2943544..2944644 (-) 1101 WP_118119489.1 3-dehydroquinate synthase -
  DBX26_RS13715 (DBX26_13690) aroK 2944676..2945194 (-) 519 WP_014233147.1 shikimate kinase AroK -
  DBX26_RS13720 (DBX26_13695) pilQ 2945383..2947122 (-) 1740 WP_162889729.1 type IV pilus secretin PilQ Machinery gene
  DBX26_RS13725 (DBX26_13700) pilP 2947154..2947669 (-) 516 WP_020334614.1 pilus assembly protein PilP Machinery gene
  DBX26_RS13730 (DBX26_13705) pilO 2947659..2948252 (-) 594 WP_020334615.1 type 4a pilus biogenesis protein PilO Machinery gene
  DBX26_RS13735 (DBX26_13710) pilN 2948245..2948820 (-) 576 WP_118119493.1 PilN domain-containing protein Machinery gene
  DBX26_RS13740 (DBX26_13715) pilM 2948804..2949820 (-) 1017 WP_065302946.1 type IV pilus assembly protein PilM Machinery gene
  DBX26_RS13745 (DBX26_13720) - 2949964..2952531 (+) 2568 WP_118119495.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23102.59 Da        Isoelectric Point: 4.7130

>NTDB_id=288749 DBX26_RS13730 WP_020334615.1 2947659..2948252(-) (pilO) [Vibrio sp. dhg]
MVNWQDLEMDEIAEWPLIPQLLVISLLILLLQGFGYWLYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=288749 DBX26_RS13730 WP_020334615.1 2947659..2948252(-) (pilO) [Vibrio sp. dhg]
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
GATCCTGTTGCTCCAAGGTTTCGGCTATTGGCTGTACTTGGTGCCTAAGGAAGAGCGATTAAATGACCTCATCCAGCAGG
AAGAAACACTCAAAGTTGCGTTACGAATTAAAGCCAACAAGGTTGCCGCATTACCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTACCCGCCCAGAAAGAGTTAGCCACCATGCTGGCGTCCGTTAATGA
GCTCGGCATAGACAATAAACTGACCTTCACCCGAATTGACTGGGGAGAAAAGCAGTCTGATCACTTTTTGTATCAGCTGC
CACTTAACATCGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCACGCATCATC
ACTTTTCAAGATGTGACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCTCATACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(48-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

88.947

96.447

0.858
  pilO Vibrio cholerae strain A1552

70.558

100

0.706

Multiple sequence alignment