Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CDG57_RS14450 Genome accession   NZ_CP028800
Coordinates   2947553..2948779 (+) Length   408 a.a.
NCBI ID   WP_087539738.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCHAJ59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2942553..2953779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS14415 (CDG57_14405) rimP 2943178..2943702 (-) 525 WP_004916844.1 ribosome maturation factor RimP -
  CDG57_RS14435 (CDG57_14425) secG 2944325..2944654 (-) 330 WP_004916847.1 preprotein translocase subunit SecG -
  CDG57_RS14440 (CDG57_14430) tpiA 2944667..2945458 (-) 792 WP_005403576.1 triose-phosphate isomerase -
  CDG57_RS14445 (CDG57_14435) pilB 2945804..2947528 (+) 1725 WP_087539739.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CDG57_RS14450 (CDG57_14440) pilC 2947553..2948779 (+) 1227 WP_087539738.1 type II secretion system F family protein Machinery gene
  CDG57_RS14455 (CDG57_14445) pilD 2948779..2949639 (+) 861 WP_087539737.1 prepilin peptidase Machinery gene
  CDG57_RS14460 (CDG57_14450) coaE 2949641..2950240 (+) 600 WP_087539736.1 dephospho-CoA kinase -
  CDG57_RS14465 (CDG57_14455) - 2950237..2951148 (-) 912 WP_004958607.1 DMT family transporter -
  CDG57_RS14470 (CDG57_14460) rlmB 2951179..2951928 (-) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CDG57_RS14475 (CDG57_14465) - 2952120..2952446 (-) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45042.45 Da        Isoelectric Point: 9.8209

>NTDB_id=287815 CDG57_RS14450 WP_087539738.1 2947553..2948779(+) (pilC) [Acinetobacter junii strain WCHAJ59]
MVAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKNEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFTSFGADLPAFTQMVVNMSKWMQEYWFILIIAIGIFIT
GFLEAKKRSKKFRDTLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNLFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=287815 CDG57_RS14450 WP_087539738.1 2947553..2948779(+) (pilC) [Acinetobacter junii strain WCHAJ59]
ATGGTAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTACGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCAAAAGTCACCTTACGTAAACAAGGTGTGACTATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACCTTGGATATCACAGTTTTCACACGCCAATTAGCAACA
ATGATGAAAGCGGGTGTGCCATTAGTACAAGGCTTTGAAATTGTTGCAGAAGGATTAGAAAACCCATCCATGCGTGAGGT
CGTATTAGGTTTAAAAAACGAAGTTGAAGGCGGTAATACTTTTGCTGGTGCTTTAAGAAAATACCCTCAATATTTCGACA
ATTTATTTTGTTCACTCGTCGAATCTGGTGAACAATCAGGTGCCCTTGAAACGATGCTAGATCGTGTTGCTGTTTATAAA
GAAAAAAGTGAATTACTCAAACAAAAAATTAAAAAAGCGATGAAATATCCTGCCACTGTTATCGTTGTAGCTGTAATTGT
AACAATCATTCTAATGGTTAAGGTAGTACCCGTTTTCCAAGACCTCTTTACATCCTTTGGAGCTGATCTACCAGCTTTTA
CCCAAATGGTTGTAAATATGTCTAAATGGATGCAAGAGTATTGGTTTATCCTCATTATTGCTATAGGTATTTTTATCACA
GGATTCTTGGAGGCAAAAAAACGTAGTAAAAAGTTTAGAGATACATTGGATAAGCTTGCTCTAAAATTGCCGATTTTTGG
AGATCTTGTATATAAAGCAATTATTGCTCGCTATAGCCGCACTTTAGCTACCACTTTTGCTGCAGGCGTACCATTAATTG
ATGCGCTTACATCCACAGCAGGTGCAACCAATAATGTTGTTTATGAAGAAGCTGTACTTAAAATTAGAGAAGATGTTGCG
ACTGGACAACAGCTCCAATTCGCGATGCGTGTTTCAAACCTCTTCCCTTCGATGGCAATTCAAATGGTTGCAATTGGTGA
AGAGTCTGGCGCTCTTGATTCGATGTTAGATAAAGTCGCAACACACTATGAAAATGAAGTCGACAACGCTGTAGATGGTC
TCACTTCAATGATGGAACCTCTTATTATGGCAATTCTTGGTGTATTAGTAGGCGGTCTCGTTATTGCCATGTATCTACCA
ATCTTCCAGATGGGTTCAGTAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.157

100

0.922
  pilC Acinetobacter baylyi ADP1

86.765

100

0.868
  pilC Pseudomonas stutzeri DSM 10701

60.688

99.755

0.605
  pilC Legionella pneumophila strain ERS1305867

54.074

99.265

0.537
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

41.584

99.02

0.412
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment