Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DBQ26_RS17795 Genome accession   NZ_CP028574
Coordinates   3362455..3363681 (+) Length   408 a.a.
NCBI ID   WP_032005674.1    Uniprot ID   A0A9X3QP39
Organism   Acinetobacter pittii strain WCHAP005046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3357455..3368681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBQ26_RS17760 (DBQ26_17760) rimP 3358126..3358650 (-) 525 WP_057089886.1 ribosome maturation factor RimP -
  DBQ26_RS17780 (DBQ26_17780) secG 3359288..3359617 (-) 330 WP_032005670.1 preprotein translocase subunit SecG -
  DBQ26_RS17785 (DBQ26_17785) tpiA 3359630..3360424 (-) 795 WP_017481951.1 triose-phosphate isomerase -
  DBQ26_RS17790 (DBQ26_17790) pilB 3360716..3362428 (+) 1713 WP_032005672.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DBQ26_RS17795 (DBQ26_17795) pilC 3362455..3363681 (+) 1227 WP_032005674.1 type II secretion system F family protein Machinery gene
  DBQ26_RS17800 (DBQ26_17800) pilD 3363681..3364541 (+) 861 WP_032005676.1 prepilin peptidase Machinery gene
  DBQ26_RS17805 (DBQ26_17805) coaE 3364543..3365139 (+) 597 WP_032005677.1 dephospho-CoA kinase -
  DBQ26_RS17810 (DBQ26_17810) - 3365136..3366050 (-) 915 WP_032005679.1 DMT family transporter -
  DBQ26_RS17815 (DBQ26_17815) rlmB 3366086..3366835 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DBQ26_RS17820 (DBQ26_17820) - 3366938..3367264 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  DBQ26_RS17825 (DBQ26_17825) - 3367341..3368651 (-) 1311 WP_032005681.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45071.50 Da        Isoelectric Point: 9.8207

>NTDB_id=285599 DBQ26_RS17795 WP_032005674.1 3362455..3363681(+) (pilC) [Acinetobacter pittii strain WCHAP005046]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLETKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=285599 DBQ26_RS17795 WP_032005674.1 3362455..3363681(+) (pilC) [Acinetobacter pittii strain WCHAP005046]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAACATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTTAAGAAGAAAGTATCAACACTCGATATCACAATTTTTACTAGGCAACTTGCAACG
ATGATGAAAGCAGGTGTGCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTCGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTAGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTTGTCGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAACATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGGGCAATTATTGCC
GCATTTCTGGAAACCAAGAAGCGTAGTAAAAAATTCCGTGATGGTTTAGATAAACTCACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGCACCTTAGCCACTACGTTTGCCGCTGGTGTCCCACTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACAGGCCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTAGTGATTGCGATGTACCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.304

100

0.973
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

52.346

99.265

0.52
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment