Detailed information NTG0285600

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DBQ26_RS17800
• Genome accession: NZ_CP028574
• Coordinates: 3363681..3364541 (+)
• Length: 286 a.a.
• NCBI ID: WP_032005676.1
• Uniprot ID: A0A9X3QIM5
• Organism: Acinetobacter pittii strain WCHAP005046
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3358681..3369541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBQ26_RS17780 (DBQ26_17780)	secG	3359288..3359617 (-)	330	WP_032005670.1	preprotein translocase subunit SecG	-
DBQ26_RS17785 (DBQ26_17785)	tpiA	3359630..3360424 (-)	795	WP_017481951.1	triose-phosphate isomerase	-
DBQ26_RS17790 (DBQ26_17790)	pilB	3360716..3362428 (+)	1713	WP_032005672.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DBQ26_RS17795 (DBQ26_17795)	pilC	3362455..3363681 (+)	1227	WP_032005674.1	type II secretion system F family protein	Machinery gene
DBQ26_RS17800 (DBQ26_17800)	pilD	3363681..3364541 (+)	861	WP_032005676.1	prepilin peptidase	Machinery gene
DBQ26_RS17805 (DBQ26_17805)	coaE	3364543..3365139 (+)	597	WP_032005677.1	dephospho-CoA kinase	-
DBQ26_RS17810 (DBQ26_17810)	-	3365136..3366050 (-)	915	WP_032005679.1	DMT family transporter	-
DBQ26_RS17815 (DBQ26_17815)	rlmB	3366086..3366835 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
DBQ26_RS17820 (DBQ26_17820)	-	3366938..3367264 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
DBQ26_RS17825 (DBQ26_17825)	-	3367341..3368651 (-)	1311	WP_032005681.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32118.51 Da
• Isoelectric Point: 6.4589

>NTDB_id=285600 DBQ26_RS17800 WP_032005676.1 3363681..3364541(+) (pilD) [Acinetobacter pittii strain WCHAP005046]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLVLKGKCGHCEHAISMRYPTIELLTMACSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=285600 DBQ26_RS17800 WP_032005676.1 3363681..3364541(+) (pilD) [Acinetobacter pittii strain WCHAP005046]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTATGTATTGG
TAGTTTTTTGAATGTGGTGATTTATCGCACCCCGAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCAGAGTGTCATCAACCT
ATTCGTTGGTATCAAAATATTCCTGTCATCAGTTGGTTGGTTTTAAAAGGTAAATGTGGGCATTGTGAGCATGCAATTAG
CATGCGCTACCCAACCATCGAACTATTAACAATGGCATGTTCACTGGTTGTGGTCATGGTATTTGGTCCAACCATACAAA
TGCTTTTTGGACTAGTCCTGACTTGGGTTCTGATTGCTTTGACATTTATAGACTTTGATACTCAGCTGCTACCCGACCGT
TTCACTTTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACATTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGGTACG
GCGACTTTAAATTGCTTGCCGCATTAGGGGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTGCGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	95.804	100	0.958
pilD	Acinetobacter baumannii D1279779	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	52.574	95.105	0.5
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	46.183	91.608	0.423