Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C1A23_RS04005 Genome accession   NZ_CP028568
Coordinates   474118..475359 (-) Length   413 a.a.
NCBI ID   WP_101614272.1    Uniprot ID   -
Organism   Aeromonas hydrophila subsp. hydrophila strain WCHAH045096     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469118..480359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1A23_RS03975 (C1A23_04060) - 469958..471142 (+) 1185 WP_101614269.1 tetratricopeptide repeat protein -
  C1A23_RS03980 (C1A23_04065) mutT 471151..471564 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  C1A23_RS03985 (C1A23_04070) yacG 471625..471819 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  C1A23_RS03990 (C1A23_04075) zapD 471829..472551 (-) 723 WP_024945431.1 cell division protein ZapD -
  C1A23_RS03995 (C1A23_04080) coaE 472589..473203 (-) 615 WP_101614270.1 dephospho-CoA kinase -
  C1A23_RS04000 (C1A23_04085) pilD 473223..474095 (-) 873 WP_101614271.1 A24 family peptidase Machinery gene
  C1A23_RS04005 (C1A23_04090) pilC 474118..475359 (-) 1242 WP_101614272.1 type II secretion system F family protein Machinery gene
  C1A23_RS04010 (C1A23_04095) pilB 475475..477181 (-) 1707 WP_029302067.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  C1A23_RS04015 (C1A23_04100) - 477188..477619 (-) 432 WP_041216993.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C1A23_RS04025 (C1A23_04110) nadC 477942..478799 (-) 858 WP_101614274.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C1A23_RS04030 (C1A23_04115) - 478805..479275 (-) 471 WP_024944772.1 TIGR02281 family clan AA aspartic protease -
  C1A23_RS04035 (C1A23_04120) ampD 479422..479994 (+) 573 WP_101614275.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45408.55 Da        Isoelectric Point: 9.8637

>NTDB_id=285540 C1A23_RS04005 WP_101614272.1 474118..475359(-) (pilC) [Aeromonas hydrophila subsp. hydrophila strain WCHAH045096]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKVKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LAIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=285540 C1A23_RS04005 WP_101614272.1 474118..475359(-) (pilC) [Aeromonas hydrophila subsp. hydrophila strain WCHAH045096]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAAAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTTTTCTCCAAGGGTGGCGCCAAGGTCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCAGC
CATGCGCGAGCTCATGGGCCAGATTGCCGCCGATGTGGAGACCGGCACACCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTTGACGATCTTTATTGCGATCTGGTGGAGGCTGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCCACCTATCGCGAGAAATCGGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTTACCTCCATCCTGCTGCTGTTCGTCATTCCTCAGTTCGAGGACATATTCAAGAGCTTTGGTGCCGAGC
TGCCTATCTTCACCCAGTTCGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTTGCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAAGTCAAGGACAACACCGACAAGTTCATACTGACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGCACCCTCTCCACCACCTTTTCCGCCGGCA
TCCCACTGGTGGATGCCTTGGTCTCTGCGGCAGGCGCATCCGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGGTCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Acinetobacter baumannii D1279779

54.25

96.852

0.525
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

51.111

98.063

0.501
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

46.599

96.126

0.448
  pilG Neisseria gonorrhoeae MS11

40

98.063

0.392
  pilG Neisseria meningitidis 44/76-A

39.753

98.063

0.39
  pilC Thermus thermophilus HB27

37.75

96.852

0.366

Multiple sequence alignment