Detailed information NTG0285539

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C1A23_RS04000
• Genome accession: NZ_CP028568
• Coordinates: 473223..474095 (-)
• Length: 290 a.a.
• NCBI ID: WP_101614271.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila subsp. hydrophila strain WCHAH045096
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 468223..479095

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1A23_RS03975 (C1A23_04060)	-	469958..471142 (+)	1185	WP_101614269.1	tetratricopeptide repeat protein	-
C1A23_RS03980 (C1A23_04065)	mutT	471151..471564 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
C1A23_RS03985 (C1A23_04070)	yacG	471625..471819 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
C1A23_RS03990 (C1A23_04075)	zapD	471829..472551 (-)	723	WP_024945431.1	cell division protein ZapD	-
C1A23_RS03995 (C1A23_04080)	coaE	472589..473203 (-)	615	WP_101614270.1	dephospho-CoA kinase	-
C1A23_RS04000 (C1A23_04085)	pilD	473223..474095 (-)	873	WP_101614271.1	A24 family peptidase	Machinery gene
C1A23_RS04005 (C1A23_04090)	pilC	474118..475359 (-)	1242	WP_101614272.1	type II secretion system F family protein	Machinery gene
C1A23_RS04010 (C1A23_04095)	pilB	475475..477181 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
C1A23_RS04015 (C1A23_04100)	-	477188..477619 (-)	432	WP_041216993.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C1A23_RS04025 (C1A23_04110)	nadC	477942..478799 (-)	858	WP_101614274.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32638.94 Da
• Isoelectric Point: 7.0270

>NTDB_id=285539 C1A23_RS04000 WP_101614271.1 473223..474095(-) (pilD) [Aeromonas hydrophila subsp. hydrophila strain WCHAH045096]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEDRYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGRFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKQLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=285539 C1A23_RS04000 WP_101614271.1 473223..474095(-) (pilD) [Aeromonas hydrophila subsp. hydrophila strain WCHAH045096]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTTCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGATCGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCAGCAACATTCCCACCCGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTATTCAACCTGACAGGGAGATTTGTACCGCTGGCTGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCAGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.621	0.603
pilD	Vibrio campbellii strain DS40M4	55.245	98.621	0.545
pilD	Acinetobacter baumannii D1279779	53.521	97.931	0.524
pilD	Acinetobacter nosocomialis M2	53.521	97.931	0.524
pilD	Neisseria gonorrhoeae MS11	48.352	94.138	0.455