Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | SK637_RS02045 | Genome accession | NZ_CP028415 |
| Coordinates | 384865..385260 (+) | Length | 131 a.a. |
| NCBI ID | WP_033688178.1 | Uniprot ID | A0A1T0C5A0 |
| Organism | Streptococcus mitis strain SK637 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 381405..402301 | 384865..385260 | within | 0 |
Gene organization within MGE regions
Location: 381405..402301
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SK637_RS02020 (SK637_00394) | - | 381405..382478 (+) | 1074 | WP_033688172.1 | N-acetylmuramoyl-L-alanine amidase family protein | - |
| SK637_RS10220 (SK637_00395) | - | 382503..382634 (-) | 132 | WP_033688173.1 | hypothetical protein | - |
| SK637_RS02025 (SK637_00396) | - | 382728..383027 (+) | 300 | WP_033688174.1 | DUF4651 domain-containing protein | - |
| SK637_RS02030 (SK637_00397) | - | 383024..383341 (+) | 318 | WP_000615777.1 | thioredoxin family protein | - |
| SK637_RS02035 (SK637_00398) | ytpR | 383357..383983 (+) | 627 | WP_033688176.1 | YtpR family tRNA-binding protein | - |
| SK637_RS02040 (SK637_00399) | - | 384026..384787 (+) | 762 | WP_033688177.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| SK637_RS02045 (SK637_00400) | ssbB/cilA | 384865..385260 (+) | 396 | WP_033688178.1 | single-stranded DNA-binding protein | Machinery gene |
| SK637_RS02050 (SK637_00401) | groES | 385416..385700 (+) | 285 | WP_033688179.1 | co-chaperone GroES | - |
| SK637_RS02055 (SK637_00402) | groL | 385716..387338 (+) | 1623 | WP_033688181.1 | chaperonin GroEL | - |
| SK637_RS02060 (SK637_00403) | - | 387476..388243 (+) | 768 | WP_000567567.1 | epoxyqueuosine reductase QueH | - |
| SK637_RS02065 (SK637_00404) | - | 388466..388999 (-) | 534 | WP_000775316.1 | DUF402 domain-containing protein | - |
| SK637_RS02070 (SK637_00405) | recX | 389088..389864 (-) | 777 | WP_033688183.1 | recombination regulator RecX | - |
| SK637_RS02075 (SK637_00406) | - | 389954..391120 (-) | 1167 | WP_033688184.1 | tyrosine-type recombinase/integrase | - |
| SK637_RS02085 (SK637_00407) | - | 391529..392671 (-) | 1143 | WP_050489866.1 | Fic family protein | - |
| SK637_RS02090 (SK637_00408) | - | 393091..393630 (-) | 540 | WP_033688188.1 | hypothetical protein | - |
| SK637_RS02095 (SK637_00409) | - | 393678..393947 (-) | 270 | WP_000505375.1 | DUF4177 domain-containing protein | - |
| SK637_RS02100 (SK637_00410) | - | 393987..394508 (-) | 522 | WP_033688189.1 | helix-turn-helix domain-containing protein | - |
| SK637_RS02105 (SK637_00411) | - | 394710..394907 (+) | 198 | WP_000794673.1 | helix-turn-helix domain-containing protein | - |
| SK637_RS02110 (SK637_00412) | - | 395138..395740 (+) | 603 | WP_033688200.1 | Rha family transcriptional regulator | - |
| SK637_RS02115 (SK637_00413) | - | 395752..396012 (+) | 261 | WP_033688190.1 | hypothetical protein | - |
| SK637_RS02125 (SK637_00414) | - | 396333..396638 (+) | 306 | WP_237397639.1 | hypothetical protein | - |
| SK637_RS02130 (SK637_00415) | - | 396595..396798 (+) | 204 | WP_033688191.1 | hypothetical protein | - |
| SK637_RS10055 | - | 396800..397006 (+) | 207 | WP_078352928.1 | hypothetical protein | - |
| SK637_RS02140 (SK637_00416) | - | 397011..397283 (+) | 273 | WP_033688202.1 | hypothetical protein | - |
| SK637_RS02145 (SK637_00417) | - | 397270..398154 (+) | 885 | WP_033688192.1 | conserved phage C-terminal domain-containing protein | - |
| SK637_RS02150 | - | 398166..398988 (+) | 823 | Protein_377 | ATP-binding protein | - |
| SK637_RS09835 (SK637_00419) | - | 398994..399149 (+) | 156 | WP_000344069.1 | hypothetical protein | - |
| SK637_RS02155 (SK637_00420) | - | 399239..399433 (+) | 195 | WP_000090304.1 | hypothetical protein | - |
| SK637_RS02160 (SK637_00421) | - | 399517..400377 (+) | 861 | WP_033688194.1 | phage major capsid protein | - |
| SK637_RS02165 (SK637_00422) | - | 400387..400938 (+) | 552 | WP_033688195.1 | hypothetical protein | - |
| SK637_RS02170 (SK637_00423) | - | 401364..401711 (+) | 348 | WP_237397640.1 | DUF722 domain-containing protein | - |
| SK637_RS02175 | - | 401966..402301 (+) | 336 | WP_033688196.1 | YjcQ family protein | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14879.80 Da Isoelectric Point: 5.9409
>NTDB_id=284695 SK637_RS02045 WP_033688178.1 384865..385260(+) (ssbB/cilA) [Streptococcus mitis strain SK637]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISADGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISADGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=284695 SK637_RS02045 WP_033688178.1 384865..385260(+) (ssbB/cilA) [Streptococcus mitis strain SK637]
ATGTATAATAAAGTTATCTTAATCGGACGCTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGTGCGACTATTGCAGTCAACCGTCGTTACAAAGACCAAAATGGGGAACGCGAAGCTGACTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACCTTGGCAAGCTACGCAACAAAAGGAAGTCTCATTTCTGCGGACGGAGAACTTCGTACCCGT
CGTTTTGAGAAAAATGGTCAGATGAACTACGTTACCGAAGTACTTGTTACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCCATGCGTGAAAATAATGCGGGGCAAGACTTAGCGGACTTGGTTTTGGAAGAGGAAGAATTGCCATTTTAA
ATGTATAATAAAGTTATCTTAATCGGACGCTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGTGCGACTATTGCAGTCAACCGTCGTTACAAAGACCAAAATGGGGAACGCGAAGCTGACTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACCTTGGCAAGCTACGCAACAAAAGGAAGTCTCATTTCTGCGGACGGAGAACTTCGTACCCGT
CGTTTTGAGAAAAATGGTCAGATGAACTACGTTACCGAAGTACTTGTTACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCCATGCGTGAAAATAATGCGGGGCAAGACTTAGCGGACTTGGTTTTGGAAGAGGAAGAATTGCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
98.473 |
100 |
0.985 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
98.473 |
100 |
0.985 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
98.473 |
100 |
0.985 |
| ssbB/cilA | Streptococcus mitis SK321 |
98.473 |
100 |
0.985 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
96.947 |
100 |
0.969 |
| ssbA | Streptococcus mutans UA159 |
75.573 |
100 |
0.756 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
70.992 |
100 |
0.71 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
59.821 |
85.496 |
0.511 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.903 |
86.26 |
0.405 |