Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C9I44_RS06745 Genome accession   NZ_CP028386
Coordinates   1317420..1317836 (-) Length   138 a.a.
NCBI ID   WP_040086968.1    Uniprot ID   -
Organism   Lactococcus garvieae strain IBB3403     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1312420..1322836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I44_RS06695 (C9I44_06660) - 1312547..1312942 (-) 396 WP_233239212.1 hypothetical protein -
  C9I44_RS06700 (C9I44_06665) - 1312939..1313460 (-) 522 WP_233239213.1 DUF1642 domain-containing protein -
  C9I44_RS06705 - 1313453..1313605 (-) 153 WP_015967991.1 hypothetical protein -
  C9I44_RS06710 (C9I44_06670) - 1313598..1313957 (-) 360 WP_233239214.1 hypothetical protein -
  C9I44_RS06715 (C9I44_06675) - 1314376..1314639 (-) 264 WP_023349398.1 hypothetical protein -
  C9I44_RS06720 (C9I44_06680) - 1314746..1314985 (-) 240 WP_019292860.1 DUF1031 family protein -
  C9I44_RS06725 (C9I44_06685) - 1314972..1315376 (-) 405 WP_198493889.1 RusA family crossover junction endodeoxyribonuclease -
  C9I44_RS06730 (C9I44_06690) - 1315526..1315690 (-) 165 WP_017370082.1 hypothetical protein -
  C9I44_RS06735 (C9I44_06695) - 1315691..1316596 (-) 906 WP_107106137.1 ATP-binding protein -
  C9I44_RS06740 (C9I44_06700) - 1316596..1317315 (-) 720 WP_107106136.1 conserved phage C-terminal domain-containing protein -
  C9I44_RS06745 (C9I44_06705) ssb 1317420..1317836 (-) 417 WP_040086968.1 single-stranded DNA-binding protein Machinery gene
  C9I44_RS06750 (C9I44_06710) - 1317826..1318506 (-) 681 WP_233239215.1 DUF1071 domain-containing protein -
  C9I44_RS06755 (C9I44_06715) - 1318518..1318916 (-) 399 WP_233239216.1 hypothetical protein -
  C9I44_RS06760 (C9I44_06720) - 1318999..1319190 (-) 192 WP_233239217.1 helix-turn-helix domain-containing protein -
  C9I44_RS06765 (C9I44_06725) - 1319356..1319634 (+) 279 WP_233239218.1 DUF3892 domain-containing protein -
  C9I44_RS06770 (C9I44_06730) - 1319665..1319856 (-) 192 WP_233239219.1 hypothetical protein -
  C9I44_RS06775 - 1319895..1320050 (-) 156 WP_165707154.1 hypothetical protein -
  C9I44_RS06780 (C9I44_06735) - 1320153..1320650 (+) 498 WP_173817201.1 hypothetical protein -
  C9I44_RS06785 (C9I44_06740) - 1320628..1320861 (-) 234 WP_016170910.1 hypothetical protein -
  C9I44_RS06790 (C9I44_06745) - 1321005..1321298 (-) 294 WP_004256852.1 hypothetical protein -
  C9I44_RS06795 (C9I44_06750) - 1321311..1322048 (-) 738 WP_233239220.1 ORF6C domain-containing protein -
  C9I44_RS06800 (C9I44_06755) - 1322078..1322305 (-) 228 WP_058212465.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15548.51 Da        Isoelectric Point: 6.3890

>NTDB_id=284579 C9I44_RS06745 WP_040086968.1 1317420..1317836(-) (ssb) [Lactococcus garvieae strain IBB3403]
MINNVVLVGRIVREPELRYTPQNTAVATFTLAVNRRFKNAQGEREADFINCVIWRQPAENLANWAKKGALVGITGSIQVR
NYENKEGQRVYVTEVLADNFQMLESNSNKTEKGKTKSNQDKDPFAGAPMEVSDDDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=284579 C9I44_RS06745 WP_040086968.1 1317420..1317836(-) (ssb) [Lactococcus garvieae strain IBB3403]
ATGATAAATAATGTTGTGTTGGTTGGACGTATTGTCCGTGAACCAGAATTAAGATATACGCCACAGAATACTGCAGTAGC
TACTTTCACTTTAGCAGTAAATCGCCGTTTTAAAAATGCTCAGGGTGAACGAGAAGCAGATTTTATAAACTGTGTTATCT
GGAGACAGCCTGCTGAAAACTTAGCAAATTGGGCAAAAAAAGGCGCATTAGTTGGTATTACTGGAAGTATACAAGTAAGA
AATTACGAGAACAAAGAAGGTCAACGTGTTTATGTTACTGAAGTACTGGCTGACAATTTCCAAATGTTGGAAAGTAATTC
AAATAAAACAGAAAAAGGGAAAACTAAATCTAATCAAGATAAAGATCCTTTTGCCGGGGCACCAATGGAAGTCTCAGATG
ATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.645
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.581

100

0.63
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.654

75.362

0.442
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.203

100

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.478

100

0.435
  ssbB/cilA Streptococcus mitis NCTC 12261

42.754

100

0.428
  ssbB/cilA Streptococcus pneumoniae Rx1

42.754

100

0.428
  ssbB/cilA Streptococcus pneumoniae D39

42.754

100

0.428
  ssbB/cilA Streptococcus pneumoniae R6

42.754

100

0.428
  ssbB/cilA Streptococcus mitis SK321

42.754

100

0.428
  ssbA Streptococcus mutans UA159

41.304

100

0.413

Multiple sequence alignment