Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7N77_RS06395 Genome accession   NZ_CP027856
Coordinates   1315518..1316759 (-) Length   413 a.a.
NCBI ID   WP_106885656.1    Uniprot ID   A0AAP4J3C9
Organism   Aeromonas rivipollensis strain KN-Mc-11N1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1310518..1321759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7N77_RS06370 (C7N77_06370) mutT 1312489..1312893 (+) 405 WP_106885652.1 8-oxo-dGTP diphosphatase MutT -
  C7N77_RS06375 (C7N77_06375) yacG 1312968..1313162 (-) 195 WP_025328449.1 DNA gyrase inhibitor YacG -
  C7N77_RS06380 (C7N77_06380) zapD 1313172..1313894 (-) 723 WP_162520171.1 cell division protein ZapD -
  C7N77_RS06385 (C7N77_06385) coaE 1313932..1314546 (-) 615 WP_106885654.1 dephospho-CoA kinase -
  C7N77_RS06390 (C7N77_06390) pilD 1314565..1315437 (-) 873 WP_106885655.1 prepilin peptidase Machinery gene
  C7N77_RS06395 (C7N77_06395) pilC 1315518..1316759 (-) 1242 WP_106885656.1 type II secretion system F family protein Machinery gene
  C7N77_RS06400 (C7N77_06400) pilB 1316890..1318596 (-) 1707 WP_106885657.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  C7N77_RS06405 (C7N77_06405) - 1318600..1319034 (-) 435 WP_106887849.1 pilin -
  C7N77_RS06415 (C7N77_06415) nadC 1319347..1320210 (-) 864 WP_106885658.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C7N77_RS06420 (C7N77_06420) - 1320214..1320684 (-) 471 WP_106885659.1 retropepsin-like aspartic protease family protein -
  C7N77_RS06425 (C7N77_06425) ampD 1320821..1321393 (+) 573 WP_106885660.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45345.33 Da        Isoelectric Point: 9.9044

>NTDB_id=280979 C7N77_RS06395 WP_106885656.1 1315518..1316759(-) (pilC) [Aeromonas rivipollensis strain KN-Mc-11N1]
MATLAQKQNAPKKVFSFRWHGVNRKGQKVSGELQADSITTVKAELRKQGVNVTRVSKQGQGMFSKGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPLSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
AIYREKSEALKSKIKKAMFYPAMVILVAIIVTSILLLFVIPQFEEIFKSFGAELPAFTRFIIAISRFMQDWWYAIFGGIA
LTVFLYVRAWRSSQKVRDNTDKFILSIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTATLAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=280979 C7N77_RS06395 WP_106885656.1 1315518..1316759(-) (pilC) [Aeromonas rivipollensis strain KN-Mc-11N1]
ATGGCAACATTAGCTCAAAAACAGAATGCACCAAAAAAGGTCTTCTCCTTCCGCTGGCACGGCGTCAATCGCAAGGGACA
AAAGGTTTCCGGTGAGCTGCAGGCCGACAGCATCACGACCGTCAAGGCGGAGCTGCGCAAGCAGGGCGTCAATGTCACCA
GGGTCAGCAAGCAGGGTCAGGGGATGTTTTCCAAGGGCGGCGCCAGGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCCGCCGGTGTGCCGCTGGTGCAGAGCCTGCAGATCATTGCCCGCGGCCACGAAAAAGCGGC
GGTGCGCGAGCTGATCGGCCAGATCGCCGCCGATGTGGAGACAGGCACCCCACTGTCGGATGCGCTGCGCCGCCATCCCC
GCCATTTTGATGCCCTCTACTGTGATCTGGTGGAGGCGGGGGAGCAGTCCGGCGCGCTGGAAACCATCTACGACCGGATT
GCCATCTATCGCGAGAAGAGCGAGGCGCTCAAATCCAAAATAAAGAAGGCCATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCATAGTGACCTCCATACTGTTGCTGTTCGTCATCCCCCAGTTCGAAGAGATCTTCAAGAGCTTCGGTGCCGAGC
TGCCCGCCTTCACCCGATTCATCATTGCCATCTCCCGCTTCATGCAGGATTGGTGGTACGCCATCTTCGGCGGCATAGCC
CTGACAGTATTCCTCTATGTGCGCGCCTGGCGCAGCTCTCAGAAGGTACGTGACAACACCGACAAGTTCATCCTCTCCAT
TCCGGTCGTTGGCAACATACTGCACAAGGCGGCCATGGCCCGTTTCGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TTCCCCTGGTGGATGCCCTGGTCTCCGCTGCCGGGGCCTCGGGCAACTATGTCTATCGCACGGCTACCCTGGCCATTCGC
AACGAGGTTGTGGCAGGGATGCAGATCAACGTGGCGATGCGCACGGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATAGGTGAAGAGTCCGGCGCCATCGACGACATGCTCTCCAAGGTCGCCGCCATCTTCGAGCAGGAGGTGGACGACA
TGGTCGATGGTCTCACCAGCCTGCTCGAGCCCATCATAATGGTGGTGCTGGGGGTGCTGGTCGGTGGCATGGTCGTCGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.303

95.884

0.53
  pilC Legionella pneumophila strain ERS1305867

51.605

98.063

0.506
  pilC Acinetobacter baumannii D1279779

51.87

97.094

0.504
  pilC Acinetobacter baylyi ADP1

50.882

96.126

0.489
  pilC Vibrio cholerae strain A1552

46.192

98.547

0.455
  pilC Vibrio campbellii strain DS40M4

44.802

97.821

0.438
  pilG Neisseria meningitidis 44/76-A

40.247

98.063

0.395
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment