Detailed information NTG0280978

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C7N77_RS06390
• Genome accession: NZ_CP027856
• Coordinates: 1314565..1315437 (-)
• Length: 290 a.a.
• NCBI ID: WP_106885655.1
• Uniprot ID: -
• Organism: Aeromonas rivipollensis strain KN-Mc-11N1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1309565..1320437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7N77_RS06365 (C7N77_06365)	secA	1309613..1312333 (+)	2721	WP_106885651.1	preprotein translocase subunit SecA	-
C7N77_RS06370 (C7N77_06370)	mutT	1312489..1312893 (+)	405	WP_106885652.1	8-oxo-dGTP diphosphatase MutT	-
C7N77_RS06375 (C7N77_06375)	yacG	1312968..1313162 (-)	195	WP_025328449.1	DNA gyrase inhibitor YacG	-
C7N77_RS06380 (C7N77_06380)	zapD	1313172..1313894 (-)	723	WP_162520171.1	cell division protein ZapD	-
C7N77_RS06385 (C7N77_06385)	coaE	1313932..1314546 (-)	615	WP_106885654.1	dephospho-CoA kinase	-
C7N77_RS06390 (C7N77_06390)	pilD	1314565..1315437 (-)	873	WP_106885655.1	prepilin peptidase	Machinery gene
C7N77_RS06395 (C7N77_06395)	pilC	1315518..1316759 (-)	1242	WP_106885656.1	type II secretion system F family protein	Machinery gene
C7N77_RS06400 (C7N77_06400)	pilB	1316890..1318596 (-)	1707	WP_106885657.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
C7N77_RS06405 (C7N77_06405)	-	1318600..1319034 (-)	435	WP_106887849.1	pilin	-
C7N77_RS06415 (C7N77_06415)	nadC	1319347..1320210 (-)	864	WP_106885658.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31968.24 Da
• Isoelectric Point: 6.6290

>NTDB_id=280978 C7N77_RS06390 WP_106885655.1 1314565..1315437(-) (pilD) [Aeromonas rivipollensis strain KN-Mc-11N1]
MVPLIELAQGLPWLYLSLVFLFSLMVGSFLNVVIHRLPIMLEREWQAEYSDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
IGALENIPLLSWLWLKGRCRQCKTPISARYPLVELLTALLSVAVAATLAPGWGALAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=280978 C7N77_RS06390 WP_106885655.1 1314565..1315437(-) (pilD) [Aeromonas rivipollensis strain KN-Mc-11N1]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGGTTTTTCTCTTCTCCCTGATGGTTGG
CAGCTTTCTGAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATACAGTGACTACTTCG
GCAGCGAAGTGGCCACCTCCCCCGCCGAGCCCTACAACCTGATGGTGCCGCGCTCCCGCTGCCCGCACTGCGATCACCCC
ATAGGCGCACTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGGCAATGCAAGACGCCCATCTC
GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCGCCGTCGCCGCGACCCTGGCTCCGGGATGGGGCG
CCCTGGCCGCGCTCCTGCTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGTTGCTGCCGGACCAA
CTCACCTTGCCGCTGCTGTGGGGCGGTCTGCTGTTCAATCTGGCGGGGGGCTTTGTGCCTCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCGTCACTG
GTCGGCGCCATCATCGGCATAGGGCTCATACTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATAGTTCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	62.105	98.276	0.61
pilD	Vibrio campbellii strain DS40M4	56.747	99.655	0.566
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Acinetobacter baumannii D1279779	53.237	95.862	0.51
pilD	Neisseria gonorrhoeae MS11	49.624	91.724	0.455