Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7K70_RS02215 Genome accession   NZ_CP027804
Coordinates   458763..460004 (-) Length   413 a.a.
NCBI ID   WP_017409439.1    Uniprot ID   A0AAX0XY15
Organism   Aeromonas hydrophila strain KN-Mc-1R2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453763..465004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K70_RS02180 (C7K70_02180) - 453793..454977 (+) 1185 WP_106551642.1 tetratricopeptide repeat protein -
  C7K70_RS02185 (C7K70_02185) mutT 454986..455399 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  C7K70_RS02190 (C7K70_02190) - 455431..456241 (-) 811 Protein_414 IS1595 family transposase -
  C7K70_RS02195 (C7K70_02195) yacG 456270..456464 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  C7K70_RS02200 (C7K70_02200) zapD 456474..457196 (-) 723 WP_024945431.1 cell division protein ZapD -
  C7K70_RS02205 (C7K70_02205) coaE 457234..457848 (-) 615 WP_106551643.1 dephospho-CoA kinase -
  C7K70_RS02210 (C7K70_02210) pilD 457868..458740 (-) 873 WP_106551644.1 A24 family peptidase Machinery gene
  C7K70_RS02215 (C7K70_02215) pilC 458763..460004 (-) 1242 WP_017409439.1 type II secretion system F family protein Machinery gene
  C7K70_RS02220 (C7K70_02220) pilB 460120..461826 (-) 1707 WP_106551645.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  C7K70_RS23490 - 461830..462261 (-) 432 WP_106551646.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C7K70_RS02235 (C7K70_02235) nadC 462584..463441 (-) 858 WP_106551648.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C7K70_RS02240 (C7K70_02240) - 463447..463917 (-) 471 WP_024944772.1 TIGR02281 family clan AA aspartic protease -
  C7K70_RS02245 (C7K70_02245) ampD 464065..464637 (+) 573 WP_106551649.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45408.55 Da        Isoelectric Point: 9.8637

>NTDB_id=280834 C7K70_RS02215 WP_017409439.1 458763..460004(-) (pilC) [Aeromonas hydrophila strain KN-Mc-1R2]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LAIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=280834 C7K70_RS02215 WP_017409439.1 458763..460004(-) (pilC) [Aeromonas hydrophila strain KN-Mc-1R2]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGAGTGAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAAGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAGGCACTGCGCCGTCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAATCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCTACCTATCGCGAGAAATCGGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTTACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGACATCTTCAAGAGCTTCGGCGCCGAGC
TACCCATCTTCACCCAGTTCGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTCGCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCGTACTGACAAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACGACCTTCTCTGCCGGTA
TCCCGCTGGTGGATGCCTTGGTTTCTGCAGCTGGCGCCTCCGGCAACTATGTCTACCGTACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCACTTATCATGGTGGTGTTGGGGGTTCTGGTCGGCGGCATGGTAGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Vibrio cholerae strain A1552

47.739

96.368

0.46
  pilC Vibrio campbellii strain DS40M4

46.348

96.126

0.446
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366

Multiple sequence alignment