Detailed information NTG0280833

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C7K70_RS02210
• Genome accession: NZ_CP027804
• Coordinates: 457868..458740 (-)
• Length: 290 a.a.
• NCBI ID: WP_106551644.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain KN-Mc-1R2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 452868..463740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7K70_RS02180 (C7K70_02180)	-	453793..454977 (+)	1185	WP_106551642.1	tetratricopeptide repeat protein	-
C7K70_RS02185 (C7K70_02185)	mutT	454986..455399 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
C7K70_RS02190 (C7K70_02190)	-	455431..456241 (-)	811	Protein_414	IS1595 family transposase	-
C7K70_RS02195 (C7K70_02195)	yacG	456270..456464 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
C7K70_RS02200 (C7K70_02200)	zapD	456474..457196 (-)	723	WP_024945431.1	cell division protein ZapD	-
C7K70_RS02205 (C7K70_02205)	coaE	457234..457848 (-)	615	WP_106551643.1	dephospho-CoA kinase	-
C7K70_RS02210 (C7K70_02210)	pilD	457868..458740 (-)	873	WP_106551644.1	A24 family peptidase	Machinery gene
C7K70_RS02215 (C7K70_02215)	pilC	458763..460004 (-)	1242	WP_017409439.1	type II secretion system F family protein	Machinery gene
C7K70_RS02220 (C7K70_02220)	pilB	460120..461826 (-)	1707	WP_106551645.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
C7K70_RS23490	-	461830..462261 (-)	432	WP_106551646.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C7K70_RS02235 (C7K70_02235)	nadC	462584..463441 (-)	858	WP_106551648.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32462.68 Da
• Isoelectric Point: 6.4851

>NTDB_id=280833 C7K70_RS02210 WP_106551644.1 457868..458740(-) (pilD) [Aeromonas hydrophila strain KN-Mc-1R2]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQSQQEEHYNLMVPHSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=280833 C7K70_RS02210 WP_106551644.1 457868..458740(-) (pilD) [Aeromonas hydrophila strain KN-Mc-1R2]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTTCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAATGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGTCGCAGCAGGAAGAACACTACAACCTGATGGTGCCGCATTCTGCCTGTCCCCATTGCGGGCACGCC
ATCACGGCCATGGAAAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGTCAGGCACCCATCTC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGTTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAAATGCTGCTGCCTGACCAG
TTGACCCTGCCACTGCTGTGGGGCGGCCTGTTGTTCAATCTGACAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGTGCTTTCATCGGAATTGGCCTCATTCTGCTGCGCAATCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459