Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7H73_RS13860 Genome accession   NZ_CP027792
Coordinates   3029135..3030352 (+) Length   405 a.a.
NCBI ID   WP_106847187.1    Uniprot ID   -
Organism   Pulveribacter suum strain SC2-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3024135..3035352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H73_RS13830 (C7H73_13810) cgtA 3024159..3025238 (-) 1080 WP_106847182.1 Obg family GTPase CgtA -
  C7H73_RS13835 (C7H73_13815) rpmA 3025333..3025590 (-) 258 WP_106847183.1 50S ribosomal protein L27 -
  C7H73_RS13840 (C7H73_13820) rplU 3025609..3025920 (-) 312 WP_106847184.1 50S ribosomal protein L21 -
  C7H73_RS13845 (C7H73_13825) - 3026102..3027085 (+) 984 WP_227001356.1 polyprenyl synthetase family protein -
  C7H73_RS13855 (C7H73_13835) pilB 3027374..3029110 (+) 1737 WP_106847186.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C7H73_RS13860 (C7H73_13840) pilC 3029135..3030352 (+) 1218 WP_106847187.1 type II secretion system F family protein Machinery gene
  C7H73_RS13865 (C7H73_13845) pilD 3030352..3031239 (+) 888 WP_106847188.1 A24 family peptidase Machinery gene
  C7H73_RS13870 (C7H73_13850) coaE 3031314..3031856 (+) 543 WP_264371566.1 dephospho-CoA kinase -
  C7H73_RS13875 (C7H73_13855) zapD 3031908..3032663 (+) 756 WP_106847189.1 cell division protein ZapD -
  C7H73_RS13880 (C7H73_13860) - 3032675..3032890 (+) 216 WP_106847190.1 DNA gyrase inhibitor YacG -
  C7H73_RS15915 - 3032878..3032979 (-) 102 WP_157948355.1 DUF1330 domain-containing protein -
  C7H73_RS13890 (C7H73_13870) - 3033178..3033876 (-) 699 WP_106847191.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44167.90 Da        Isoelectric Point: 9.6077

>NTDB_id=280797 C7H73_RS13860 WP_106847187.1 3029135..3030352(+) (pilC) [Pulveribacter suum strain SC2-7]
MATAASRNIKDAVFEWEGKDRSGKIVRGEVRASGENQVKATLRRQGVLATKIKKRRTRSGKKIKPKDIALFTRQMATMMK
AGVPLLQSFDIVGRGNTNASVTKLLNDIRADVETGTSLNSAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEKT
EAIKSKIRSALMYPISVVVVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMAISEFFVAYWWLIFGVLGGGFYFFM
QAWKRSEKMQATMDRLLLKLPVFGALIDKSAVARWTRTLSTMFAAGVPLVEALDSVGGAAGNYVYASATERIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGALDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=280797 C7H73_RS13860 WP_106847187.1 3029135..3030352(+) (pilC) [Pulveribacter suum strain SC2-7]
ATGGCTACGGCTGCATCAAGGAACATCAAGGACGCAGTCTTTGAGTGGGAGGGCAAGGACCGCAGCGGCAAGATCGTGCG
CGGTGAAGTGCGTGCTTCCGGCGAGAACCAGGTCAAGGCCACGCTGCGCCGCCAGGGCGTTCTGGCCACCAAGATCAAGA
AGCGCCGCACGCGCTCGGGCAAGAAGATCAAGCCCAAGGACATTGCGCTGTTCACACGGCAGATGGCAACCATGATGAAG
GCAGGCGTGCCACTGCTGCAGTCCTTTGACATCGTGGGCCGGGGCAATACCAACGCCAGCGTGACCAAGCTGCTCAATGA
CATCCGGGCGGACGTGGAAACCGGCACATCGCTGAATTCTGCGTTCCGCAAGTACCCGATGTACTTCGACAGCCTTTATT
GCAACCTGGTGGAAGCGGGCGAGGCGGCCGGTATTTTGGAAGCTCTGCTGGACCGGCTGGCGCTGTACATGGAGAAAACT
GAGGCCATCAAGTCCAAGATCCGCTCGGCGCTGATGTACCCCATCTCCGTGGTCGTGGTGGCCTTCGTGGTGGTCACCGT
CATCATGATTTTCGTGATTCCGGCGTTCAAGGAGGTCTTTACCTCCTTCGGAGCCGACCTGCCAGCGCCCACGCTGCTGG
TTATGGCCATCAGCGAATTCTTTGTCGCCTATTGGTGGCTGATTTTCGGCGTGCTCGGCGGAGGGTTCTACTTCTTCATG
CAGGCCTGGAAGCGCAGCGAGAAGATGCAGGCCACCATGGACCGGCTGCTGCTGAAGCTGCCCGTCTTCGGCGCCCTGAT
CGACAAATCGGCCGTCGCGCGCTGGACGCGCACGCTGTCCACCATGTTCGCTGCGGGCGTACCGCTGGTGGAAGCGCTGG
ACTCCGTGGGCGGAGCTGCAGGCAACTACGTCTATGCCTCGGCCACCGAACGCATCCAGCAGGAGGTTTCCACCGGCACC
AGCCTCACGGCGGCCATGGGCAATGCCAACGTTTTCCCTTCCATGGTGCTGCAGATGTGCGCCATCGGTGAGGAATCCGG
CGCCCTGGACCATATGCTGGGCAAGGCGGCAGATTTCTACGAAGCCGAGGTGGATGAGATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTTCTGGGCACCCTCATCGGCGGCATCGTGGTGTCGATGTACCTGCCCATCTTCAAG
CTGGGACAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.693

99.753

0.556
  pilG Neisseria gonorrhoeae MS11

52.141

98.025

0.511
  pilG Neisseria meningitidis 44/76-A

51.889

98.025

0.509
  pilC Legionella pneumophila strain ERS1305867

51.515

97.778

0.504
  pilC Acinetobacter baylyi ADP1

50.251

98.272

0.494
  pilC Acinetobacter baumannii D1279779

49.37

98.025

0.484
  pilC Vibrio campbellii strain DS40M4

39.9

99.012

0.395
  pilC Vibrio cholerae strain A1552

40.152

97.778

0.393
  pilC Thermus thermophilus HB27

38.038

100

0.393

Multiple sequence alignment