Detailed information NTG0280798

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C7H73_RS13865
• Genome accession: NZ_CP027792
• Coordinates: 3030352..3031239 (+)
• Length: 295 a.a.
• NCBI ID: WP_106847188.1
• Uniprot ID: A0A2P1NNK7
• Organism: Pulveribacter suum strain SC2-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3025352..3036239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7H73_RS13840 (C7H73_13820)	rplU	3025609..3025920 (-)	312	WP_106847184.1	50S ribosomal protein L21	-
C7H73_RS13845 (C7H73_13825)	-	3026102..3027085 (+)	984	WP_227001356.1	polyprenyl synthetase family protein	-
C7H73_RS13855 (C7H73_13835)	pilB	3027374..3029110 (+)	1737	WP_106847186.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C7H73_RS13860 (C7H73_13840)	pilC	3029135..3030352 (+)	1218	WP_106847187.1	type II secretion system F family protein	Machinery gene
C7H73_RS13865 (C7H73_13845)	pilD	3030352..3031239 (+)	888	WP_106847188.1	A24 family peptidase	Machinery gene
C7H73_RS13870 (C7H73_13850)	coaE	3031314..3031856 (+)	543	WP_264371566.1	dephospho-CoA kinase	-
C7H73_RS13875 (C7H73_13855)	zapD	3031908..3032663 (+)	756	WP_106847189.1	cell division protein ZapD	-
C7H73_RS13880 (C7H73_13860)	-	3032675..3032890 (+)	216	WP_106847190.1	DNA gyrase inhibitor YacG	-
C7H73_RS15915	-	3032878..3032979 (-)	102	WP_157948355.1	DUF1330 domain-containing protein	-
C7H73_RS13890 (C7H73_13870)	-	3033178..3033876 (-)	699	WP_106847191.1	ABC transporter ATP-binding protein	-
C7H73_RS13895 (C7H73_13875)	-	3033873..3035723 (-)	1851	WP_106847192.1	ABC transporter permease subunit	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 31345.91 Da
• Isoelectric Point: 7.8016

>NTDB_id=280798 C7H73_RS13865 WP_106847188.1 3030352..3031239(+) (pilD) [Pulveribacter suum strain SC2-7]
MTGSPLADAVLIGIVGLLVGSFLNVVIYRLPLMMERQWADECTQYAQDSGLLAQASQPAEKAAERFNLLVPRSRCPSCGH
GIRWFENVPVLSWLALRGRCAACKAPISARYPLVELATGALFYACAAKWGWTATTAVWCVFCAALVALTFIDWDTTLLPD
DITLPLLWGGLLASAAGLTAVPLTDAVIGATAGYLSLWAVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILLA
SVIGALVGIAMKFASSLRDGKYVPFGPFLAGGGFAALLWGPGRIMQAVFSTLGLA

Nucleotide

• Length: 888 bp

>NTDB_id=280798 C7H73_RS13865 WP_106847188.1 3030352..3031239(+) (pilD) [Pulveribacter suum strain SC2-7]
ATGACCGGCTCCCCCCTTGCCGATGCCGTGTTGATCGGTATCGTCGGGCTGCTCGTGGGCAGCTTCCTGAATGTAGTCAT
CTACCGCCTGCCGCTGATGATGGAGCGCCAGTGGGCTGACGAGTGCACGCAATATGCCCAGGACAGCGGCCTGCTGGCTC
AGGCCAGCCAGCCAGCCGAGAAAGCAGCCGAGCGCTTCAACCTCCTGGTTCCGCGCTCGCGCTGCCCTTCCTGCGGACAC
GGCATCCGCTGGTTCGAGAACGTGCCGGTACTGAGCTGGCTGGCTTTGCGGGGGCGTTGCGCCGCTTGCAAGGCGCCCAT
CAGCGCACGCTATCCTCTGGTGGAGCTGGCCACGGGCGCACTGTTCTATGCCTGCGCCGCCAAGTGGGGATGGACGGCCA
CCACGGCCGTCTGGTGTGTGTTCTGCGCGGCGTTGGTAGCCCTGACCTTCATCGACTGGGACACTACACTGCTGCCCGAC
GACATCACCCTGCCGCTGCTGTGGGGCGGCTTGCTGGCTTCGGCAGCGGGGCTGACGGCCGTACCGCTGACCGATGCCGT
GATCGGTGCAACCGCGGGCTACCTGTCGCTTTGGGCCGTCTATTGGGGCTTCAAACTGGCCACGGGCAAGGAGGGCATGG
GCTACGGGGACTTCAAACTCTTTGCGGCCCTCGGGGCCTGGTTCGGCTGGCAGGCTTTGGTGCCCATCATCTTGCTCGCC
TCGGTCATCGGGGCCCTGGTCGGCATCGCAATGAAATTCGCCAGCAGCTTGCGCGATGGCAAATATGTGCCGTTCGGCCC
GTTTCTGGCCGGCGGTGGCTTTGCCGCTCTGCTGTGGGGACCGGGACGCATCATGCAAGCGGTGTTCTCCACCCTGGGTT
TGGCGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-249)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-128)

3D structure

• AlphaFold DB: A0A2P1NNK7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.128	95.593	0.498
pilD	Vibrio campbellii strain DS40M4	49.653	97.627	0.485
pilD	Neisseria gonorrhoeae MS11	48.485	89.492	0.434
pilD	Acinetobacter baumannii D1279779	46.182	93.22	0.431
pilD	Acinetobacter nosocomialis M2	45.455	93.22	0.424