Detailed information NTG0280591

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: C3B72_RS12160
• Genome accession: NZ_CP027782
• Coordinates: 2488774..2489211 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain Mfbjulcb2
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2483774..2494211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3B72_RS12135 (C3B72_12060)	rplI	2484533..2484976 (-)	444	WP_159036548.1	50S ribosomal protein L9	-
C3B72_RS12140 (C3B72_12065)	-	2484973..2486967 (-)	1995	WP_035141195.1	DHH family phosphoesterase	-
C3B72_RS12145 (C3B72_12070)	-	2486980..2487969 (-)	990	WP_011098434.1	YybS family protein	-
C3B72_RS12150 (C3B72_12075)	-	2487983..2488300 (-)	318	WP_011098433.1	MazG-like family protein	-
C3B72_RS12155 (C3B72_12080)	rpsR	2488487..2488753 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
C3B72_RS12160 (C3B72_12085)	ssb	2488774..2489211 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
C3B72_RS12165 (C3B72_12090)	rpsF	2489227..2489511 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
C3B72_RS12170 (C3B72_12095)	-	2489609..2489809 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
C3B72_RS12175 (C3B72_12100)	-	2489802..2490686 (-)	885	WP_115606164.1	mechanosensitive ion channel family protein	-
C3B72_RS12180 (C3B72_12105)	ytvI	2490923..2491978 (+)	1056	WP_011098430.1	sporulation integral membrane protein YtvI	-
C3B72_RS12185 (C3B72_12110)	yyaC	2492034..2492609 (+)	576	WP_011098429.1	spore protease YyaC	-
C3B72_RS12190 (C3B72_12115)	-	2492631..2493128 (-)	498	WP_011098428.1	DUF4446 family protein	-
C3B72_RS12195 (C3B72_12120)	-	2493168..2494025 (-)	858	WP_115606166.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=280591 C3B72_RS12160 WP_011098432.1 2488774..2489211(-) (ssb) [Clostridium tetani strain Mfbjulcb2]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=280591 C3B72_RS12160 WP_011098432.1 2488774..2489211(-) (ssb) [Clostridium tetani strain Mfbjulcb2]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAATGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTATATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTTCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372