Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J83_RS04160 Genome accession   NZ_CP027762
Coordinates   931775..932983 (-) Length   402 a.a.
NCBI ID   WP_124416408.1    Uniprot ID   -
Organism   Pseudomonas sp. LBUM920     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 926775..937983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J83_RS04120 (C4J83_0813) - 927670..927843 (-) 174 WP_064450648.1 DUF3094 family protein -
  C4J83_RS04125 (C4J83_0814) - 927933..928562 (-) 630 WP_106578601.1 DUF1780 domain-containing protein -
  C4J83_RS04130 (C4J83_0815) - 928663..929130 (+) 468 WP_124416405.1 FAD/FMN-containing dehydrogenase -
  C4J83_RS04135 (C4J83_0816) - 929127..929816 (+) 690 WP_124416406.1 energy-coupling factor ABC transporter permease -
  C4J83_RS04140 (C4J83_0817) - 929883..930098 (+) 216 WP_003171680.1 hypothetical protein -
  C4J83_RS04145 (C4J83_0818) yacG 930095..930295 (-) 201 WP_106578604.1 DNA gyrase inhibitor YacG -
  C4J83_RS04150 (C4J83_0819) coaE 930292..930915 (-) 624 WP_106578605.1 dephospho-CoA kinase -
  C4J83_RS04155 (C4J83_0820) pilD 930912..931778 (-) 867 WP_124416407.1 A24 family peptidase Machinery gene
  C4J83_RS04160 (C4J83_0821) pilC 931775..932983 (-) 1209 WP_124416408.1 type II secretion system F family protein Machinery gene
  C4J83_RS04165 (C4J83_0822) - 933187..933600 (+) 414 WP_124418836.1 pilin -
  C4J83_RS04175 (C4J83_0824) - 933891..934196 (+) 306 WP_106578609.1 DUF6388 family protein -
  C4J83_RS04180 (C4J83_0825) nadC 934240..935088 (-) 849 WP_119736538.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J83_RS04185 (C4J83_0826) - 935335..937491 (+) 2157 WP_124416409.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43636.34 Da        Isoelectric Point: 9.9001

>NTDB_id=280310 C4J83_RS04160 WP_124416408.1 931775..932983(-) (pilC) [Pseudomonas sp. LBUM920]
MNDAATIYAWEGINRKGRRVCGQTTGQNLALIKAQLREQGICPGRIRKKTPRLPSFAPPIKPADIALFTRQLATLLKAGI
PLLQAFDIIGEGFDNRLMRQLIKGLKQEIAAGNNLAAALKKQPRYFDDLYCHLIAAGEHAGALETLLERVAIHLEKSQQL
KARIKKAMTYPIAVIVIAGLVSTVLLIHVVPQFQNLFAGVDGTLPGFTLSVIALSEFLQHAWWMVALGLAATLIGLRHAY
RESAGLRHWLDLGLLNAPLAGTLVKKTAVARYARTLSTTFAAGVPLVQALDCVAGAVGNGLFKQAIEHMRHDVSTGMQLH
QSMANSRLFPSMAIQMTAIGEESGTLDRMLEKVANHYEADVQNLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=280310 C4J83_RS04160 WP_124416408.1 931775..932983(-) (pilC) [Pseudomonas sp. LBUM920]
ATGAATGACGCTGCAACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGAGTCTGCGGGCAAACCACAGGCCA
GAACCTGGCGCTGATCAAGGCACAACTGCGCGAGCAAGGGATTTGCCCCGGCCGCATCCGCAAGAAAACCCCACGCCTGC
CAAGCTTCGCCCCGCCGATAAAACCCGCCGATATTGCCCTGTTCACCCGCCAGCTGGCGACATTACTGAAGGCTGGCATA
CCGCTGTTGCAGGCGTTCGACATCATTGGCGAAGGCTTCGACAACCGCCTGATGCGCCAGCTCATCAAGGGCTTGAAACA
GGAAATCGCTGCCGGCAACAACCTGGCGGCCGCGCTGAAAAAACAACCGCGCTATTTCGATGACCTGTATTGCCACCTGA
TTGCCGCCGGCGAGCACGCCGGCGCCCTGGAAACGCTGCTGGAGCGCGTTGCCATCCATCTGGAAAAAAGCCAGCAGCTC
AAGGCGCGCATCAAGAAGGCCATGACCTACCCCATTGCCGTCATTGTGATTGCAGGCCTGGTCAGCACGGTCTTGCTGAT
CCACGTGGTGCCGCAGTTCCAGAACCTGTTTGCCGGTGTCGATGGCACACTGCCGGGCTTCACCCTGAGTGTCATAGCCT
TGTCCGAGTTCCTGCAGCATGCCTGGTGGATGGTGGCACTGGGCCTGGCCGCGACACTTATCGGGCTGCGCCACGCCTAC
CGCGAATCTGCCGGTCTTCGTCACTGGCTGGACCTTGGTTTGTTGAACGCGCCACTGGCAGGCACACTGGTGAAAAAAAC
CGCGGTTGCCCGCTACGCCCGCACACTCTCAACGACCTTCGCCGCGGGCGTGCCGTTGGTGCAGGCGCTGGATTGCGTGG
CGGGAGCGGTGGGAAATGGGTTGTTCAAACAGGCGATCGAGCATATGCGTCACGATGTATCCACTGGCATGCAGTTGCAC
CAATCCATGGCCAACAGCCGCCTGTTTCCCAGTATGGCAATCCAGATGACGGCCATCGGGGAAGAATCGGGAACCCTGGA
CCGCATGCTGGAAAAAGTCGCCAATCACTACGAGGCCGATGTGCAAAACCTGGTCGATAACCTCACCAGCCTGATGGAGC
CCCTGATCATGGTGGTATTGGGCGGCATCGTTGGCGCACTGGTGATAGCCATGTACCTGCCAGTGTTCCAGCTGGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.975

98.259

0.57
  pilC Acinetobacter baylyi ADP1

51.263

98.507

0.505
  pilC Acinetobacter baumannii D1279779

49.873

98.259

0.49
  pilC Legionella pneumophila strain ERS1305867

47.342

98.259

0.465
  pilG Neisseria gonorrhoeae MS11

41.253

95.274

0.393
  pilG Neisseria meningitidis 44/76-A

39.791

95.025

0.378
  pilC Vibrio cholerae strain A1552

38.287

98.756

0.378
  pilC Thermus thermophilus HB27

36.908

99.751

0.368
  pilC Vibrio campbellii strain DS40M4

36.802

98.01

0.361

Multiple sequence alignment