Detailed information NTG0280309

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J83_RS04155
• Genome accession: NZ_CP027762
• Coordinates: 930912..931778 (-)
• Length: 288 a.a.
• NCBI ID: WP_124416407.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LBUM920
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 925912..936778

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J83_RS04115 (C4J83_0812)	-	926311..927609 (-)	1299	WP_106578600.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J83_RS04120 (C4J83_0813)	-	927670..927843 (-)	174	WP_064450648.1	DUF3094 family protein	-
C4J83_RS04125 (C4J83_0814)	-	927933..928562 (-)	630	WP_106578601.1	DUF1780 domain-containing protein	-
C4J83_RS04130 (C4J83_0815)	-	928663..929130 (+)	468	WP_124416405.1	FAD/FMN-containing dehydrogenase	-
C4J83_RS04135 (C4J83_0816)	-	929127..929816 (+)	690	WP_124416406.1	energy-coupling factor ABC transporter permease	-
C4J83_RS04140 (C4J83_0817)	-	929883..930098 (+)	216	WP_003171680.1	hypothetical protein	-
C4J83_RS04145 (C4J83_0818)	yacG	930095..930295 (-)	201	WP_106578604.1	DNA gyrase inhibitor YacG	-
C4J83_RS04150 (C4J83_0819)	coaE	930292..930915 (-)	624	WP_106578605.1	dephospho-CoA kinase	-
C4J83_RS04155 (C4J83_0820)	pilD	930912..931778 (-)	867	WP_124416407.1	A24 family peptidase	Machinery gene
C4J83_RS04160 (C4J83_0821)	pilC	931775..932983 (-)	1209	WP_124416408.1	type II secretion system F family protein	Machinery gene
C4J83_RS04165 (C4J83_0822)	-	933187..933600 (+)	414	WP_124418836.1	pilin	-
C4J83_RS04175 (C4J83_0824)	-	933891..934196 (+)	306	WP_106578609.1	DUF6388 family protein	-
C4J83_RS04180 (C4J83_0825)	nadC	934240..935088 (-)	849	WP_119736538.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31528.74 Da
• Isoelectric Point: 8.4898

>NTDB_id=280309 C4J83_RS04155 WP_124416407.1 930912..931778(-) (pilD) [Pseudomonas sp. LBUM920]
MNPLLNEQPWLFVGLSVVLGLIVGSFLNVLVWRLPKMLEREWRAQAQEVLGLPADPGGPAYNLVRPHSCCPRCNHPIRAW
ENIPLLSYLLLKGRCAHCREPISARYPITELAGALVSAAVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDALVLP
LLWLGLILNSVGLLATLPDALWGAVIGYMSLWTVFWLFKMITGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLLGVL
AGLILLRLRKPQGSAPMPFGPCLAIAGWIALLWGGQITGFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=280309 C4J83_RS04155 WP_124416407.1 930912..931778(-) (pilD) [Pseudomonas sp. LBUM920]
TTGAACCCGTTGCTGAATGAACAACCGTGGCTCTTTGTCGGGCTGTCAGTGGTGCTGGGCCTGATTGTCGGCAGTTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCGCCCAGGCCCAGGAGGTGCTCGGCTTGCCTG
CTGACCCTGGGGGCCCGGCTTACAACCTGGTGCGCCCTCATTCCTGCTGCCCCCGGTGCAATCATCCGATTCGCGCGTGG
GAAAATATTCCGCTGCTCAGTTACCTGCTGCTCAAGGGTCGTTGTGCCCATTGTCGTGAACCTATCAGTGCCCGCTACCC
GATCACCGAACTTGCCGGCGCGCTGGTCTCGGCGGCGGTAGCTTGGCATTTCGGCTTCGGCTGGCAAGCCGGTGCAGTGA
TGCTGCTGAGCTGGGGGTTGCTGGCGATGAGCCTGATCGATGTGGATCATCAACTGCTGCCCGACGCTCTGGTGTTGCCG
CTGTTATGGCTGGGGCTGATTCTCAACAGCGTGGGCTTGCTGGCAACGCTGCCGGATGCGCTTTGGGGGGCGGTCATCGG
ATACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGATGATCACCGGCAAGGACGGCATGGGCTATGGCGACTTCAAGT
TATTGGCCTTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGATGACACTGCTGATGTCTTCGTTGCTCGGGGTGCTT
GCAGGGCTGATCCTGCTGCGCTTGCGCAAGCCCCAGGGGTCGGCACCGATGCCGTTTGGTCCGTGTCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTTGCAGTCCGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.357	98.264	0.524
pilD	Vibrio campbellii strain DS40M4	49.648	98.611	0.49
pilD	Acinetobacter nosocomialis M2	48.54	95.139	0.462
pilD	Acinetobacter baumannii D1279779	48.54	95.139	0.462
pilD	Neisseria gonorrhoeae MS11	49.225	89.583	0.441