Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C6571_RS03985 Genome accession   NZ_CP027669
Coordinates   837013..838233 (+) Length   406 a.a.
NCBI ID   WP_106445544.1    Uniprot ID   -
Organism   Simplicispira suum strain SC1-8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 832013..843233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6571_RS03960 (C6571_03960) rpmA 833163..833423 (-) 261 WP_106445541.1 50S ribosomal protein L27 -
  C6571_RS03965 (C6571_03965) rplU 833452..833763 (-) 312 WP_106445542.1 50S ribosomal protein L21 -
  C6571_RS03970 (C6571_03970) - 834061..834990 (+) 930 WP_106448027.1 polyprenyl synthetase family protein -
  C6571_RS03980 (C6571_03980) pilB 835254..836990 (+) 1737 WP_106445543.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C6571_RS03985 (C6571_03985) pilC 837013..838233 (+) 1221 WP_106445544.1 type II secretion system F family protein Machinery gene
  C6571_RS03990 (C6571_03990) pilD 838233..839114 (+) 882 WP_106445545.1 prepilin peptidase Machinery gene
  C6571_RS03995 (C6571_03995) coaE 839132..839731 (+) 600 WP_106445546.1 dephospho-CoA kinase -
  C6571_RS04000 (C6571_04000) zapD 839811..840566 (+) 756 WP_106445547.1 cell division protein ZapD -
  C6571_RS04005 (C6571_04005) - 840580..840789 (+) 210 WP_106445548.1 DNA gyrase inhibitor YacG -
  C6571_RS04010 (C6571_04010) - 840830..841255 (-) 426 WP_106445549.1 NUDIX domain-containing protein -
  C6571_RS04015 (C6571_04015) - 841255..842127 (-) 873 WP_106445550.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44624.65 Da        Isoelectric Point: 9.6385

>NTDB_id=278847 C6571_RS03985 WP_106445544.1 837013..838233(+) (pilC) [Simplicispira suum strain SC1-8]
MATAASARSTKDFVYEWEGKDRNGKIVRGEIRAMGENQVQATLRRQGVLPVKIKKRKMRSGRKIKPKDIALFTRQMATMM
KAGVPLLQAFDIVGRGNANPSVGKLLNDIRSDVETGTSLNGAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEK
TEAIKSKIRSALMYPISVIIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMAISDVFVKWWWLIFGVIGGGFYFF
MQAWRRNEKMQMFMDRVLLKIPIFGVLIEKSAVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYAMATDKIQQEVSTG
TSLTAAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=278847 C6571_RS03985 WP_106445544.1 837013..838233(+) (pilC) [Simplicispira suum strain SC1-8]
ATGGCGACTGCAGCATCCGCACGGAGTACGAAAGACTTCGTCTATGAATGGGAAGGCAAGGACCGCAATGGGAAAATCGT
CCGAGGCGAGATCCGCGCGATGGGCGAAAACCAGGTTCAAGCCACCTTGCGGCGCCAAGGGGTCCTGCCAGTAAAAATTA
AAAAGCGCAAAATGCGCTCTGGCCGGAAAATCAAACCCAAGGATATTGCGCTGTTCACGCGCCAAATGGCCACTATGATG
AAAGCGGGTGTGCCTCTGTTGCAGGCATTTGACATAGTCGGACGCGGAAATGCCAATCCAAGTGTGGGCAAACTATTAAA
CGACATCCGCAGCGATGTGGAAACGGGAACATCCCTCAATGGTGCATTTCGTAAGTACCCTATGTACTTCGATAGTCTCT
ATTGCAATCTAGTGGAAGCAGGCGAAGCGGCCGGTATTCTCGAAGCATTGCTCGACCGCCTTGCTCTCTATATGGAAAAA
ACTGAGGCGATCAAATCTAAGATTCGTTCCGCGCTGATGTATCCGATTTCCGTAATCATCGTTGCTTTTGTCGTGGTTAC
TGTGATCATGATTTTTGTGATCCCTGCATTCAAAGAAGTCTTTACCTCATTTGGCGCGGACCTTCCCGCACCCACATTGT
TTGTAATGGCCATCAGCGACGTGTTCGTCAAATGGTGGTGGCTGATTTTTGGCGTGATTGGCGGTGGTTTTTATTTCTTC
ATGCAAGCATGGCGACGCAATGAAAAAATGCAGATGTTCATGGATCGTGTACTTCTCAAAATTCCAATCTTTGGCGTCCT
GATCGAAAAATCTGCAGTCGCGCGTTGGACCCGCACGCTTTCCACCATGTTTGCCGCCGGTGTGCCGCTCGTCGAAGCCT
TGGACTCGGTGGGTGGCGCTTCGGGAAACTCGGTCTATGCGATGGCTACCGACAAGATTCAGCAGGAAGTATCGACTGGC
ACCAGCCTCACCGCAGCAATGACGAACGCCAATGTTTTCCCCTCCATGGTGCTGCAAATGTGCGCCATTGGCGAGGAATC
GGGCTCCATTGACCACATGCTTGGCAAGGCTGCGGACTTCTACGAGGCCGAGGTCGATGACATGGTGGCCGGACTCTCCA
GCCTGATGGAGCCCATCATCATTGTGTTCCTGGGTACTCTTATCGGCGGCATCGTGGTTTCGATGTATCTGCCGATCTTC
AAGCTGGGCCAGGTTGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.985

99.015

0.525
  pilG Neisseria gonorrhoeae MS11

51.5

98.522

0.507
  pilG Neisseria meningitidis 44/76-A

51.25

98.522

0.505
  pilC Legionella pneumophila strain ERS1305867

49.497

98.03

0.485
  pilC Acinetobacter baylyi ADP1

48.995

98.03

0.48
  pilC Acinetobacter baumannii D1279779

47.607

97.783

0.466
  pilC Vibrio cholerae strain A1552

40.554

97.783

0.397
  pilC Vibrio campbellii strain DS40M4

39

98.522

0.384
  pilC Thermus thermophilus HB27

37.594

98.276

0.369

Multiple sequence alignment