Detailed information NTG0278848

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C6571_RS03990
• Genome accession: NZ_CP027669
• Coordinates: 838233..839114 (+)
• Length: 293 a.a.
• NCBI ID: WP_106445545.1
• Uniprot ID: A0A2S0MXE6
• Organism: Simplicispira suum strain SC1-8
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 833233..844114

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6571_RS03965 (C6571_03965)	rplU	833452..833763 (-)	312	WP_106445542.1	50S ribosomal protein L21	-
C6571_RS03970 (C6571_03970)	-	834061..834990 (+)	930	WP_106448027.1	polyprenyl synthetase family protein	-
C6571_RS03980 (C6571_03980)	pilB	835254..836990 (+)	1737	WP_106445543.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C6571_RS03985 (C6571_03985)	pilC	837013..838233 (+)	1221	WP_106445544.1	type II secretion system F family protein	Machinery gene
C6571_RS03990 (C6571_03990)	pilD	838233..839114 (+)	882	WP_106445545.1	prepilin peptidase	Machinery gene
C6571_RS03995 (C6571_03995)	coaE	839132..839731 (+)	600	WP_106445546.1	dephospho-CoA kinase	-
C6571_RS04000 (C6571_04000)	zapD	839811..840566 (+)	756	WP_106445547.1	cell division protein ZapD	-
C6571_RS04005 (C6571_04005)	-	840580..840789 (+)	210	WP_106445548.1	DNA gyrase inhibitor YacG	-
C6571_RS04010 (C6571_04010)	-	840830..841255 (-)	426	WP_106445549.1	NUDIX domain-containing protein	-
C6571_RS04015 (C6571_04015)	-	841255..842127 (-)	873	WP_106445550.1	ATP-binding protein	-
C6571_RS04020 (C6571_04020)	argJ	842172..843401 (-)	1230	WP_106445551.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31193.76 Da
• Isoelectric Point: 5.2706

>NTDB_id=278848 C6571_RS03990 WP_106445545.1 838233..839114(+) (pilD) [Simplicispira suum strain SC1-8]
MPVEAWLDATVAGVFGLLIGSFLNVVIYRVPRILEGQWEREIADYAASRTAEVASGSAVAEPEPFNLLVPRSRCQTCGHQ
LRWFENIPVFSYLGLRGKCASCGARISMRYPLVELLTGALFVYCAQRFGLTATGAAWAFFCAMLVAMAFIDWDTTLLPDN
LTLPLLWAGLLASAAGLIEVPLVQSVVGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFGALGAWFGWPALVPLILMAS
VVGACVGIAMKVASSLREGGYVPFGPFLVGAGLAALILGPNAVQDAILGLFGL

Nucleotide

• Length: 882 bp

>NTDB_id=278848 C6571_RS03990 WP_106445545.1 838233..839114(+) (pilD) [Simplicispira suum strain SC1-8]
ATGCCGGTTGAGGCCTGGTTGGACGCCACAGTCGCTGGCGTCTTCGGTTTGCTTATTGGCAGCTTTCTTAACGTAGTCAT
ATACCGCGTGCCCCGCATTCTGGAGGGGCAATGGGAGCGAGAAATCGCTGACTATGCTGCATCCCGTACTGCAGAAGTCG
CTTCCGGCTCGGCAGTAGCTGAGCCTGAGCCTTTCAATCTACTCGTCCCCCGCTCGCGCTGCCAAACTTGCGGACACCAA
CTGCGCTGGTTTGAGAACATCCCGGTTTTCAGCTATCTGGGTTTGCGCGGCAAGTGTGCTTCGTGCGGCGCGCGCATCAG
CATGCGCTACCCCCTGGTCGAGCTGTTGACAGGGGCACTGTTCGTCTATTGCGCACAGCGCTTTGGGTTGACCGCAACAG
GTGCGGCTTGGGCGTTTTTCTGCGCCATGCTTGTGGCCATGGCCTTTATCGATTGGGACACCACGCTATTGCCCGACAAC
CTCACGCTGCCGCTGCTGTGGGCCGGACTTTTGGCATCAGCGGCCGGGTTGATCGAAGTTCCGCTCGTTCAGTCGGTGGT
GGGTGCTGCGGCGGGCTATCTGTCTCTTTGGCTGGTCTATTGGGCTTTCAAACTGGCTACAGGCAAGGAAGGCATGGGCT
ATGGAGACTTCAAACTGTTCGGGGCCCTGGGTGCCTGGTTCGGCTGGCCTGCCCTGGTCCCGCTGATCCTGATGGCCTCG
GTGGTCGGCGCCTGTGTCGGCATTGCCATGAAGGTAGCGAGCAGTTTGCGCGAAGGCGGCTACGTGCCGTTTGGTCCATT
TCTCGTGGGAGCCGGCCTCGCGGCATTGATCTTGGGGCCTAACGCCGTACAAGACGCGATTCTGGGTCTCTTCGGACTGT
GA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-128)

• Type IV leader peptidase family (Peptidase_A24) (139-248)

3D structure

• AlphaFold DB: A0A2S0MXE6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.827	98.635	0.491
pilD	Vibrio cholerae strain A1552	47.143	95.563	0.451
pilD	Neisseria gonorrhoeae MS11	46.947	89.42	0.42
pilD	Acinetobacter nosocomialis M2	41.697	92.491	0.386
pilD	Acinetobacter baumannii D1279779	41.697	92.491	0.386