Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C6568_RS04000 Genome accession   NZ_CP027667
Coordinates   862921..864141 (+) Length   406 a.a.
NCBI ID   WP_106682999.1    Uniprot ID   -
Organism   Melaminivora suipulveris strain SC2-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 857921..869141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6568_RS03970 (C6568_03970) cgtA 857934..859013 (-) 1080 WP_106682994.1 Obg family GTPase CgtA -
  C6568_RS03975 (C6568_03975) rpmA 859136..859393 (-) 258 WP_106682995.1 50S ribosomal protein L27 -
  C6568_RS03980 (C6568_03980) rplU 859420..859731 (-) 312 WP_106682996.1 50S ribosomal protein L21 -
  C6568_RS03985 (C6568_03985) - 859962..860891 (+) 930 WP_234026798.1 polyprenyl synthetase family protein -
  C6568_RS03995 (C6568_03995) pilB 861152..862888 (+) 1737 WP_106682998.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C6568_RS04000 (C6568_04000) pilC 862921..864141 (+) 1221 WP_106682999.1 type II secretion system F family protein Machinery gene
  C6568_RS04005 (C6568_04005) pilD 864141..865025 (+) 885 WP_106683000.1 prepilin peptidase Machinery gene
  C6568_RS04010 (C6568_04010) coaE 865022..865636 (+) 615 WP_106683001.1 dephospho-CoA kinase -
  C6568_RS04015 (C6568_04015) zapD 865689..866444 (+) 756 WP_106685330.1 cell division protein ZapD -
  C6568_RS04020 (C6568_04020) - 866441..866671 (+) 231 WP_106683002.1 DNA gyrase inhibitor YacG -
  C6568_RS04025 (C6568_04025) - 866659..866949 (-) 291 WP_106683003.1 DUF1330 domain-containing protein -
  C6568_RS04030 (C6568_04030) - 866972..867670 (-) 699 WP_106683004.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44556.41 Da        Isoelectric Point: 9.7147

>NTDB_id=278822 C6568_RS04000 WP_106682999.1 862921..864141(+) (pilC) [Melaminivora suipulveris strain SC2-9]
MATAAPRATIKDIVFEWEGKDRSGKTVRGEVRASGENQVKATLRRQGVLPTKIKKRRMRSGKKIKPKDIALFTRQMATMM
KAGVPLLQSFDIVGRGNSNPSVTKLLNDIRADVETGTSLNAAFRKYPMYFDALYCNLVEAGEAAGILEALLDRLALYMEK
TEAIKSKIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLLVMAISEFFVAYWWLIFGVIGGGFYFF
MQAWKRNERMQQVMDRALLKLPIFGELINKSAVARWTRTLSTMFAAGVPLVEALDSVGGASGNYVYASATEKIQQEVSTG
TSLTAAMGNTNVFPSMVLQMTAIGEESGALDHMLGKAADFYEQEVDEMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=278822 C6568_RS04000 WP_106682999.1 862921..864141(+) (pilC) [Melaminivora suipulveris strain SC2-9]
ATGGCCACGGCAGCACCGAGAGCAACGATCAAGGACATCGTCTTCGAATGGGAGGGCAAGGACCGCAGCGGCAAGACCGT
CCGCGGGGAGGTGCGCGCCTCCGGCGAGAACCAGGTCAAGGCCACCCTGCGCCGCCAGGGGGTGCTGCCCACCAAGATCA
AGAAGCGGCGCATGCGCTCGGGCAAGAAGATCAAGCCCAAGGACATCGCGCTGTTCACGCGCCAGATGGCCACCATGATG
AAGGCGGGCGTACCGCTGTTGCAGTCGTTCGACATCGTGGGCCGCGGCAACAGCAACCCCAGCGTGACCAAACTGCTCAA
TGACATCCGCGCGGATGTCGAAACCGGCACCTCGCTGAACGCCGCGTTTCGCAAATATCCGATGTATTTCGACGCCCTGT
ACTGCAACCTGGTGGAGGCGGGCGAGGCGGCCGGCATCCTGGAGGCGCTGCTGGACCGCCTGGCGCTGTACATGGAAAAG
ACCGAGGCCATCAAGTCCAAGATCCGCTCGGCGCTGATGTACCCGATCTCGGTCATCATCGTGGCCTTCGTCGTGGTCAC
CATCATCATGATTTTCGTGATCCCAGCATTCAAGGAAGTGTTCACTTCCTTCGGAGCCGACCTGCCGGCACCGACGCTGC
TGGTCATGGCCATCAGCGAGTTCTTCGTCGCCTACTGGTGGCTGATCTTCGGCGTGATCGGTGGCGGGTTTTATTTCTTC
ATGCAAGCCTGGAAGCGCAACGAGCGCATGCAGCAGGTCATGGACCGCGCGCTGCTCAAGCTGCCGATCTTTGGCGAGCT
GATCAACAAGTCGGCCGTGGCGCGCTGGACGCGCACCCTGTCCACCATGTTCGCCGCTGGCGTGCCGCTGGTGGAGGCAC
TGGACTCGGTGGGCGGCGCCAGCGGCAACTACGTCTATGCCTCGGCGACGGAAAAAATCCAACAGGAGGTCTCCACCGGC
ACCAGCCTCACGGCGGCCATGGGCAACACCAACGTGTTTCCGTCGATGGTGCTGCAGATGACGGCCATCGGCGAAGAGTC
CGGCGCGCTGGACCACATGCTCGGCAAGGCTGCCGACTTCTACGAGCAGGAGGTCGACGAAATGGTCGCCGGCCTGTCCA
GCCTGATGGAGCCCATCATCATCGTGTTCCTGGGCACCATCATCGGCGGCATCGTGGTCTCGATGTATCTGCCCATCTTC
AAACTGGGCCAAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.335

99.261

0.549
  pilG Neisseria gonorrhoeae MS11

51.889

97.783

0.507
  pilG Neisseria meningitidis 44/76-A

51.637

97.783

0.505
  pilC Acinetobacter baylyi ADP1

51.005

98.03

0.5
  pilC Legionella pneumophila strain ERS1305867

50.754

98.03

0.498
  pilC Acinetobacter baumannii D1279779

49.37

97.783

0.483
  pilC Vibrio campbellii strain DS40M4

39.518

100

0.404
  pilC Vibrio cholerae strain A1552

40.201

98.03

0.394
  pilC Thermus thermophilus HB27

37.56

100

0.387

Multiple sequence alignment