Detailed information NTG0278823

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C6568_RS04005
• Genome accession: NZ_CP027667
• Coordinates: 864141..865025 (+)
• Length: 294 a.a.
• NCBI ID: WP_106683000.1
• Uniprot ID: A0A2R3Q9R8
• Organism: Melaminivora suipulveris strain SC2-9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 859141..870025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6568_RS03980 (C6568_03980)	rplU	859420..859731 (-)	312	WP_106682996.1	50S ribosomal protein L21	-
C6568_RS03985 (C6568_03985)	-	859962..860891 (+)	930	WP_234026798.1	polyprenyl synthetase family protein	-
C6568_RS03995 (C6568_03995)	pilB	861152..862888 (+)	1737	WP_106682998.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C6568_RS04000 (C6568_04000)	pilC	862921..864141 (+)	1221	WP_106682999.1	type II secretion system F family protein	Machinery gene
C6568_RS04005 (C6568_04005)	pilD	864141..865025 (+)	885	WP_106683000.1	prepilin peptidase	Machinery gene
C6568_RS04010 (C6568_04010)	coaE	865022..865636 (+)	615	WP_106683001.1	dephospho-CoA kinase	-
C6568_RS04015 (C6568_04015)	zapD	865689..866444 (+)	756	WP_106685330.1	cell division protein ZapD	-
C6568_RS04020 (C6568_04020)	-	866441..866671 (+)	231	WP_106683002.1	DNA gyrase inhibitor YacG	-
C6568_RS04025 (C6568_04025)	-	866659..866949 (-)	291	WP_106683003.1	DUF1330 domain-containing protein	-
C6568_RS04030 (C6568_04030)	-	866972..867670 (-)	699	WP_106683004.1	ABC transporter ATP-binding protein	-
C6568_RS04035 (C6568_04035)	-	867667..869511 (-)	1845	WP_106683005.1	ABC transporter permease subunit	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 31268.70 Da
• Isoelectric Point: 8.0747

>NTDB_id=278823 C6568_RS04005 WP_106683000.1 864141..865025(+) (pilD) [Melaminivora suipulveris strain SC2-9]
MTGSPLADAALAGIFGLLVGSFLNVVIHRLPKMLERQWTVECTQYAQDAGLLPLTAAPGDAPQAFNLWTPRSRCPSCGHG
VRWYENIPLLSWLALRGRCSACKAFIGWRYPLVELATGALFFACAQRWGWSATTAAWCAFCAALLALTAIDWDTTLLPDD
ITLPLLWGGLLAAVAGWTSVGPNDAVIGAAAGYLSLWVVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILLAS
VIGAVTGIAMKLASSLREGKYVPFGPFLAGGGFAALLWGPQRIMQAALAVLGLS

Nucleotide

• Length: 885 bp

>NTDB_id=278823 C6568_RS04005 WP_106683000.1 864141..865025(+) (pilD) [Melaminivora suipulveris strain SC2-9]
ATGACCGGCTCGCCGCTTGCCGATGCCGCGCTGGCCGGCATCTTCGGCCTGCTCGTGGGCAGCTTTCTGAACGTGGTGAT
TCATCGGCTGCCGAAGATGCTGGAGCGCCAGTGGACGGTGGAATGCACGCAGTACGCGCAGGACGCCGGGCTGCTGCCCC
TAACCGCAGCGCCCGGCGATGCACCGCAGGCTTTCAATCTGTGGACGCCGCGCTCGCGCTGCCCGTCGTGCGGGCATGGC
GTGCGCTGGTACGAGAATATTCCGCTGCTGAGCTGGCTCGCGCTGCGCGGGCGCTGTTCGGCCTGTAAAGCCTTCATTGG
ATGGCGCTATCCGCTGGTGGAACTGGCCACGGGCGCGTTGTTCTTTGCCTGCGCGCAGCGCTGGGGCTGGAGCGCCACGA
CGGCGGCTTGGTGCGCCTTTTGTGCGGCCTTGCTGGCCCTGACCGCCATCGACTGGGACACGACGTTGCTGCCTGACGAC
ATCACGCTGCCACTGTTGTGGGGCGGCCTGTTGGCAGCTGTGGCGGGCTGGACCAGCGTCGGACCGAACGACGCCGTGAT
CGGTGCAGCCGCCGGCTATCTCTCGCTCTGGGTGGTGTACTGGGGTTTCAAGCTGGCTACCGGCAAGGAAGGCATGGGCT
ACGGGGACTTCAAGCTGTTCGCCGCCTTGGGGGCGTGGTTCGGCTGGCAGGCACTGGTGCCCATCATTTTGCTGGCCTCA
GTCATCGGCGCCGTGACGGGCATTGCCATGAAGCTCGCCAGCAGCCTGCGCGAAGGGAAATACGTGCCTTTTGGGCCTTT
CCTGGCGGGCGGCGGCTTTGCCGCGCTGCTGTGGGGCCCGCAGCGCATCATGCAGGCGGCCCTCGCGGTTCTGGGGCTTT
CGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-127)

• Type IV leader peptidase family (Peptidase_A24) (139-248)

3D structure

• AlphaFold DB: A0A2R3Q9R8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.727	93.537	0.493
pilD	Vibrio campbellii strain DS40M4	49.65	97.279	0.483
pilD	Neisseria gonorrhoeae MS11	49.071	91.497	0.449
pilD	Acinetobacter nosocomialis M2	43.885	94.558	0.415
pilD	Acinetobacter baumannii D1279779	43.885	94.558	0.415