Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C6570_RS17510 Genome accession   NZ_CP027666
Coordinates   3829001..3830224 (+) Length   407 a.a.
NCBI ID   WP_106704358.1    Uniprot ID   A0A2S0MIT8
Organism   Ottowia oryzae strain KADR8-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3824001..3835224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6570_RS17490 (C6570_17480) - 3824499..3825344 (+) 846 WP_123812296.1 hypothetical protein -
  C6570_RS17495 (C6570_17485) - 3825495..3826235 (+) 741 WP_106704356.1 DUF6683 family protein -
  C6570_RS17500 (C6570_17490) - 3826322..3827032 (-) 711 WP_106704357.1 GNAT family N-acetyltransferase -
  C6570_RS17505 (C6570_17495) pilB 3827226..3828965 (+) 1740 WP_106704791.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C6570_RS17510 (C6570_17500) pilC 3829001..3830224 (+) 1224 WP_106704358.1 type II secretion system F family protein Machinery gene
  C6570_RS17515 (C6570_17505) pilD 3830224..3831066 (+) 843 WP_106704359.1 A24 family peptidase Machinery gene
  C6570_RS17520 (C6570_17510) coaE 3831073..3831690 (+) 618 WP_106704360.1 dephospho-CoA kinase -
  C6570_RS17525 (C6570_17515) zapD 3831721..3832476 (+) 756 WP_106704361.1 cell division protein ZapD -
  C6570_RS17530 (C6570_17520) - 3832473..3832712 (+) 240 WP_106704362.1 DNA gyrase inhibitor YacG -
  C6570_RS17535 (C6570_17525) - 3832811..3833290 (-) 480 WP_106704363.1 NUDIX domain-containing protein -
  C6570_RS17540 (C6570_17530) - 3833303..3834181 (-) 879 WP_106704364.1 ATP-binding protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44746.75 Da        Isoelectric Point: 9.8445

>NTDB_id=278816 C6570_RS17510 WP_106704358.1 3829001..3830224(+) (pilC) [Ottowia oryzae strain KADR8-3]
MATRVASSKTVKELVFEWEGKDRNGKVVRGETRAAGENQVQASLRRQGIFVTKLKKRRMRSGKKIKPKDIAIFTRQLATM
MKAGVPLLQSFDIVGRGNPNPSVTKLLNDVRADIETGTSLSAAFRKYPLYFNSLYCNLVEAGESAGILESLLDRLATYME
KTEAIKSKIKSALMYPIAVLVVAFVVVAVIMIFVIPAFKEVFTSFGADLPAPTLVVIAMSEFFVKWWWLIFGGIFGGVYF
FMQAWRRDEKVQMFMDRLLLKLPIFGELIEKSVVARWTRTLSTMFAAGVPLVESLDSVGGAAGNSVYKIATDKIQKEVAT
GTSLTAAMTNANIFPSMVLQMTAIGEESGALDHMLGKAADFYEDEVDEMVAGLSSLMEPIIIVVLGTVIGGIVVSMYLPI
FKLGQVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=278816 C6570_RS17510 WP_106704358.1 3829001..3830224(+) (pilC) [Ottowia oryzae strain KADR8-3]
ATGGCAACCCGAGTCGCAAGCAGTAAAACGGTCAAGGAACTCGTTTTTGAGTGGGAAGGCAAGGACCGCAACGGCAAGGT
TGTGCGAGGCGAGACGCGTGCCGCGGGTGAGAATCAGGTTCAAGCCTCACTGCGGCGCCAAGGCATTTTTGTCACCAAAC
TCAAGAAGCGCCGCATGCGCTCCGGCAAGAAAATCAAGCCGAAAGACATTGCGATTTTTACCCGGCAGCTTGCGACGATG
ATGAAGGCGGGGGTGCCGCTGCTTCAATCTTTCGATATTGTAGGACGCGGCAACCCGAACCCCAGCGTCACGAAATTGCT
GAACGACGTTCGAGCCGACATCGAAACGGGTACTTCGCTCTCTGCAGCGTTTCGCAAATATCCGCTTTACTTCAACTCTC
TTTATTGCAATTTGGTCGAAGCGGGCGAGTCGGCAGGTATTCTGGAAAGCCTTCTCGATCGTCTGGCGACGTATATGGAG
AAAACGGAGGCGATCAAATCCAAGATCAAGTCCGCGCTAATGTATCCTATTGCAGTTTTAGTGGTCGCGTTCGTCGTGGT
GGCCGTCATCATGATCTTTGTGATCCCGGCATTCAAGGAGGTGTTCACCAGCTTCGGCGCTGATCTTCCTGCCCCGACTT
TAGTAGTCATCGCGATGAGTGAGTTTTTCGTCAAATGGTGGTGGCTTATCTTCGGGGGCATTTTCGGTGGCGTGTATTTT
TTCATGCAAGCCTGGCGCCGCGATGAAAAAGTACAAATGTTCATGGACCGCCTGCTCCTCAAGCTGCCCATCTTTGGCGA
GTTGATCGAAAAGTCGGTGGTGGCGCGCTGGACGCGCACGCTTTCCACCATGTTTGCCGCGGGCGTCCCGTTGGTCGAGT
CTCTGGATTCGGTGGGGGGCGCCGCGGGCAATTCCGTCTACAAGATTGCGACAGACAAGATACAAAAGGAAGTCGCCACT
GGTACCAGTCTGACCGCTGCCATGACCAACGCCAACATCTTCCCAAGCATGGTGCTTCAAATGACAGCCATCGGTGAAGA
GTCGGGCGCGTTGGATCACATGCTCGGCAAGGCTGCAGACTTCTATGAGGATGAAGTCGATGAAATGGTCGCGGGCCTTT
CCAGCCTCATGGAGCCGATCATCATCGTGGTGCTTGGCACTGTAATCGGCGGCATCGTCGTCTCGATGTACCTACCCATC
TTCAAGCTCGGCCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0MIT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.263

0.548
  pilC Legionella pneumophila strain ERS1305867

52.261

97.789

0.511
  pilG Neisseria gonorrhoeae MS11

51.637

97.543

0.504
  pilG Neisseria meningitidis 44/76-A

51.385

97.543

0.501
  pilC Acinetobacter baylyi ADP1

48.529

100

0.486
  pilC Acinetobacter baumannii D1279779

48.363

97.543

0.472
  pilC Vibrio cholerae strain A1552

41.31

97.543

0.403
  pilC Thermus thermophilus HB27

37.709

100

0.388
  pilC Vibrio campbellii strain DS40M4

38.806

98.771

0.383

Multiple sequence alignment