Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | C6570_RS17515 | Genome accession | NZ_CP027666 |
| Coordinates | 3830224..3831066 (+) | Length | 280 a.a. |
| NCBI ID | WP_106704359.1 | Uniprot ID | A0A2S0MIV0 |
| Organism | Ottowia oryzae strain KADR8-3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3825224..3836066
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6570_RS17495 (C6570_17485) | - | 3825495..3826235 (+) | 741 | WP_106704356.1 | DUF6683 family protein | - |
| C6570_RS17500 (C6570_17490) | - | 3826322..3827032 (-) | 711 | WP_106704357.1 | GNAT family N-acetyltransferase | - |
| C6570_RS17505 (C6570_17495) | pilB | 3827226..3828965 (+) | 1740 | WP_106704791.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| C6570_RS17510 (C6570_17500) | pilC | 3829001..3830224 (+) | 1224 | WP_106704358.1 | type II secretion system F family protein | Machinery gene |
| C6570_RS17515 (C6570_17505) | pilD | 3830224..3831066 (+) | 843 | WP_106704359.1 | A24 family peptidase | Machinery gene |
| C6570_RS17520 (C6570_17510) | coaE | 3831073..3831690 (+) | 618 | WP_106704360.1 | dephospho-CoA kinase | - |
| C6570_RS17525 (C6570_17515) | zapD | 3831721..3832476 (+) | 756 | WP_106704361.1 | cell division protein ZapD | - |
| C6570_RS17530 (C6570_17520) | - | 3832473..3832712 (+) | 240 | WP_106704362.1 | DNA gyrase inhibitor YacG | - |
| C6570_RS17535 (C6570_17525) | - | 3832811..3833290 (-) | 480 | WP_106704363.1 | NUDIX domain-containing protein | - |
| C6570_RS17540 (C6570_17530) | - | 3833303..3834181 (-) | 879 | WP_106704364.1 | ATP-binding protein | - |
| C6570_RS17545 (C6570_17535) | argJ | 3834236..3835465 (-) | 1230 | WP_106704365.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
Sequence
Protein
Download Length: 280 a.a. Molecular weight: 30606.52 Da Isoelectric Point: 7.5139
>NTDB_id=278817 C6570_RS17515 WP_106704359.1 3830224..3831066(+) (pilD) [Ottowia oryzae strain KADR8-3]
MDAELWVPVLTAGLFGLLIGSFLNVVIYRLPKMLEREWAAGCAELSGQPLPEQEPFNLLVPRSRCQACGHQIRWYENIPV
LSYLALRGKCSACGTPISIRYPMIELATGVLFAWCIWRWGLNLSGGMWCLFAAMLVAMTLIDWDTTLLPDVLTLPLLWAG
LIAANLHWIPVPLSDAVWGAVGGYMSLWLVYWAFKLATGKEGMGFGDFKLFAALGAWFGWQALVPIILMSSVIGAAVGIV
MKLRSSLRDGGQIPFGPFLAMAGITAMVFGPQSILRAVGL
MDAELWVPVLTAGLFGLLIGSFLNVVIYRLPKMLEREWAAGCAELSGQPLPEQEPFNLLVPRSRCQACGHQIRWYENIPV
LSYLALRGKCSACGTPISIRYPMIELATGVLFAWCIWRWGLNLSGGMWCLFAAMLVAMTLIDWDTTLLPDVLTLPLLWAG
LIAANLHWIPVPLSDAVWGAVGGYMSLWLVYWAFKLATGKEGMGFGDFKLFAALGAWFGWQALVPIILMSSVIGAAVGIV
MKLRSSLRDGGQIPFGPFLAMAGITAMVFGPQSILRAVGL
Nucleotide
Download Length: 843 bp
>NTDB_id=278817 C6570_RS17515 WP_106704359.1 3830224..3831066(+) (pilD) [Ottowia oryzae strain KADR8-3]
ATGGACGCAGAGCTCTGGGTTCCGGTGCTCACGGCCGGTTTATTTGGCTTGTTGATTGGCAGCTTTCTCAACGTCGTCAT
TTATCGGCTGCCCAAAATGCTCGAGCGCGAATGGGCAGCCGGGTGTGCAGAGCTTTCTGGCCAACCGCTTCCCGAGCAGG
AGCCGTTCAACTTGCTCGTGCCGCGGTCTCGTTGTCAGGCTTGCGGTCACCAGATTCGCTGGTACGAAAACATCCCGGTG
TTGAGCTACCTCGCACTCCGCGGAAAATGCTCTGCTTGTGGCACGCCCATCAGCATCCGTTATCCGATGATCGAACTTGC
CACTGGCGTGCTTTTCGCGTGGTGCATTTGGCGTTGGGGCCTGAACCTGTCGGGCGGTATGTGGTGTCTGTTTGCCGCCA
TGCTGGTCGCCATGACCTTGATCGATTGGGACACCACCTTGCTGCCCGACGTGCTGACCTTGCCGCTGCTCTGGGCAGGG
CTGATCGCCGCCAACCTGCACTGGATCCCTGTGCCCTTGAGCGACGCCGTCTGGGGCGCTGTTGGTGGCTACATGTCCCT
GTGGCTCGTGTACTGGGCCTTCAAGCTGGCTACGGGCAAGGAAGGCATGGGTTTCGGTGATTTCAAGCTTTTCGCCGCAC
TCGGCGCGTGGTTTGGCTGGCAAGCGCTGGTGCCGATCATTCTGATGTCGTCCGTGATCGGTGCAGCTGTCGGCATTGTC
ATGAAGCTCAGAAGCTCGCTGCGCGACGGCGGCCAGATCCCATTCGGCCCCTTCCTAGCAATGGCCGGCATCACCGCCAT
GGTCTTTGGCCCGCAGAGCATCCTGCGCGCCGTCGGCCTTTAA
ATGGACGCAGAGCTCTGGGTTCCGGTGCTCACGGCCGGTTTATTTGGCTTGTTGATTGGCAGCTTTCTCAACGTCGTCAT
TTATCGGCTGCCCAAAATGCTCGAGCGCGAATGGGCAGCCGGGTGTGCAGAGCTTTCTGGCCAACCGCTTCCCGAGCAGG
AGCCGTTCAACTTGCTCGTGCCGCGGTCTCGTTGTCAGGCTTGCGGTCACCAGATTCGCTGGTACGAAAACATCCCGGTG
TTGAGCTACCTCGCACTCCGCGGAAAATGCTCTGCTTGTGGCACGCCCATCAGCATCCGTTATCCGATGATCGAACTTGC
CACTGGCGTGCTTTTCGCGTGGTGCATTTGGCGTTGGGGCCTGAACCTGTCGGGCGGTATGTGGTGTCTGTTTGCCGCCA
TGCTGGTCGCCATGACCTTGATCGATTGGGACACCACCTTGCTGCCCGACGTGCTGACCTTGCCGCTGCTCTGGGCAGGG
CTGATCGCCGCCAACCTGCACTGGATCCCTGTGCCCTTGAGCGACGCCGTCTGGGGCGCTGTTGGTGGCTACATGTCCCT
GTGGCTCGTGTACTGGGCCTTCAAGCTGGCTACGGGCAAGGAAGGCATGGGTTTCGGTGATTTCAAGCTTTTCGCCGCAC
TCGGCGCGTGGTTTGGCTGGCAAGCGCTGGTGCCGATCATTCTGATGTCGTCCGTGATCGGTGCAGCTGTCGGCATTGTC
ATGAAGCTCAGAAGCTCGCTGCGCGACGGCGGCCAGATCCCATTCGGCCCCTTCCTAGCAATGGCCGGCATCACCGCCAT
GGTCTTTGGCCCGCAGAGCATCCTGCGCGCCGTCGGCCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.416 |
96.071 |
0.504 |
| pilD | Vibrio campbellii strain DS40M4 |
50.929 |
96.071 |
0.489 |
| pilD | Neisseria gonorrhoeae MS11 |
51.751 |
91.786 |
0.475 |
| pilD | Acinetobacter baumannii D1279779 |
47.744 |
95 |
0.454 |
| pilD | Acinetobacter nosocomialis M2 |
46.992 |
95 |
0.446 |