Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7A17_RS06185 Genome accession   NZ_CP027657
Coordinates   1325843..1327072 (+) Length   409 a.a.
NCBI ID   WP_106737195.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NEB698     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320843..1332072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS06170 (C7A17_06170) nadC 1322546..1323394 (+) 849 WP_106737192.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C7A17_RS27320 - 1323795..1323906 (-) 112 Protein_1215 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C7A17_RS06180 (C7A17_06180) pilB 1324136..1325839 (+) 1704 WP_106737194.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C7A17_RS06185 (C7A17_06185) pilC 1325843..1327072 (+) 1230 WP_106737195.1 type II secretion system F family protein Machinery gene
  C7A17_RS06190 (C7A17_06190) pilD 1327079..1327948 (+) 870 WP_106737196.1 A24 family peptidase Machinery gene
  C7A17_RS06195 (C7A17_06195) coaE 1328126..1328734 (+) 609 WP_106737197.1 dephospho-CoA kinase -
  C7A17_RS06200 (C7A17_06200) yacG 1328731..1328925 (+) 195 WP_106737198.1 DNA gyrase inhibitor YacG -
  C7A17_RS06205 (C7A17_06205) - 1329014..1329229 (-) 216 WP_106737199.1 hypothetical protein -
  C7A17_RS06210 (C7A17_06210) - 1329333..1330022 (-) 690 WP_106737200.1 energy-coupling factor ABC transporter permease -
  C7A17_RS06215 (C7A17_06215) - 1330496..1331125 (+) 630 WP_106737201.1 DUF1780 domain-containing protein -
  C7A17_RS06220 (C7A17_06220) - 1331122..1331616 (+) 495 WP_106737202.1 MOSC domain-containing protein -
  C7A17_RS06225 (C7A17_06225) - 1331824..1331997 (+) 174 WP_106737203.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44319.04 Da        Isoelectric Point: 9.9088

>NTDB_id=278673 C7A17_RS06185 WP_106737195.1 1325843..1327072(+) (pilC) [Ectopseudomonas mendocina strain NEB698]
MATTKALKTSTFAWEGTDKRGGKVKGELSGQNAALIKAQLRKQGINPIKVRAKSNISILSKGKSIKPLDIALFTRQMATM
MKAGVPLLQSFDIISEGFENPNMRKLVDDLKQEVAAGNSFASALRKQPKYFDDLYCNLVDSGEQSGALETLLERVATYKE
KTEALKAKIKKAMTYPIAVVVVAIIVSSILLIKVVPAFEGVFAGFGAELPAFTQMVVGLSDLLREWWLIVILALFITAFG
LKEANTRSEKFRDTKDKILLKIPIVGQILYKSAVARYARTLSTTFAAGVPLVDALDSVSGATGNVKFRNAVKQIKNDVSS
GTQLNFSMRAANIFPSLAIQMTAIGEESGALDEMLGKVATFYEDEVDNMVDNLTSLMEPMIMAVLGVLVGGLVIAMYLPI
FQLGTVVTG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=278673 C7A17_RS06185 WP_106737195.1 1325843..1327072(+) (pilC) [Ectopseudomonas mendocina strain NEB698]
ATGGCGACGACAAAAGCTCTGAAAACAAGCACTTTCGCTTGGGAAGGCACAGATAAACGCGGTGGAAAAGTCAAAGGGGA
ATTGAGCGGCCAAAACGCCGCCCTAATCAAAGCACAACTGCGAAAACAAGGTATCAACCCAATAAAAGTCCGAGCAAAGT
CTAATATTTCTATATTAAGCAAGGGAAAATCGATAAAACCGTTAGACATTGCCCTTTTCACTCGACAAATGGCAACAATG
ATGAAAGCAGGCGTCCCGCTACTTCAGAGCTTTGATATTATCTCTGAGGGATTCGAAAACCCGAACATGCGCAAATTGGT
TGACGACCTCAAACAGGAAGTAGCAGCCGGCAATAGTTTTGCATCCGCGCTACGCAAACAGCCTAAGTATTTCGACGATC
TATACTGTAACTTGGTTGATTCCGGCGAACAATCCGGGGCCCTAGAAACTCTTCTCGAACGAGTGGCAACCTACAAGGAG
AAGACGGAGGCATTGAAAGCAAAAATCAAAAAAGCAATGACATACCCCATTGCTGTCGTAGTAGTTGCAATCATTGTCTC
CTCAATCCTTCTGATCAAAGTTGTTCCTGCTTTTGAAGGAGTCTTTGCAGGATTTGGAGCCGAGTTGCCTGCTTTCACTC
AAATGGTCGTAGGCCTCTCGGATCTGCTACGAGAATGGTGGCTAATTGTTATACTCGCTCTTTTCATAACAGCTTTTGGG
CTAAAAGAAGCAAACACCCGCTCAGAGAAATTTCGCGACACTAAAGATAAAATCCTTCTGAAGATTCCAATTGTCGGTCA
AATCCTTTATAAATCGGCAGTAGCTCGTTACGCAAGAACTCTATCTACTACTTTTGCAGCCGGCGTTCCGCTGGTTGATG
CTCTTGACTCTGTTTCAGGCGCCACAGGAAATGTAAAATTCCGCAATGCGGTCAAACAGATAAAGAACGATGTTTCTAGC
GGCACACAACTGAATTTCTCTATGCGAGCCGCAAACATATTTCCCTCATTAGCTATTCAAATGACTGCTATTGGAGAGGA
GTCAGGGGCGCTAGATGAAATGCTCGGGAAAGTAGCCACCTTTTACGAAGACGAAGTTGACAACATGGTTGATAACCTGA
CTAGCCTGATGGAACCTATGATTATGGCAGTGCTTGGAGTACTCGTGGGCGGATTGGTTATTGCCATGTATCTACCAATA
TTCCAATTGGGCACCGTTGTTACTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.164

98.533

0.77
  pilC Acinetobacter baumannii D1279779

61.765

99.756

0.616
  pilC Acinetobacter baylyi ADP1

60.539

99.756

0.604
  pilC Legionella pneumophila strain ERS1305867

50.882

97.066

0.494
  pilG Neisseria gonorrhoeae MS11

45.05

98.778

0.445
  pilG Neisseria meningitidis 44/76-A

44.802

98.778

0.443
  pilC Vibrio campbellii strain DS40M4

41.975

99.022

0.416
  pilC Vibrio cholerae strain A1552

41.422

99.756

0.413
  pilC Thermus thermophilus HB27

37

97.8

0.362

Multiple sequence alignment