Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C6Y56_RS24390 Genome accession   NZ_CP027561
Coordinates   5364382..5365599 (+) Length   405 a.a.
NCBI ID   WP_169431957.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5359382..5370599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS24370 (C6Y56_24640) - 5360892..5361188 (+) 297 WP_169431955.1 DUF2845 domain-containing protein -
  C6Y56_RS24375 (C6Y56_24645) - 5361354..5361710 (-) 357 WP_065261581.1 BON domain-containing protein -
  C6Y56_RS24380 (C6Y56_24650) - 5362009..5362452 (-) 444 WP_085732829.1 pilin -
  C6Y56_RS24385 (C6Y56_24655) pilB 5362679..5364379 (+) 1701 WP_169431956.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C6Y56_RS24390 (C6Y56_24660) pilC 5364382..5365599 (+) 1218 WP_169431957.1 type II secretion system F family protein Machinery gene
  C6Y56_RS24395 (C6Y56_24665) pilD 5365601..5366473 (+) 873 WP_169431958.1 A24 family peptidase Machinery gene
  C6Y56_RS24400 (C6Y56_24670) coaE 5366470..5367093 (+) 624 WP_169431959.1 dephospho-CoA kinase -
  C6Y56_RS24405 (C6Y56_24675) yacG 5367090..5367290 (+) 201 WP_039771664.1 DNA gyrase inhibitor YacG -
  C6Y56_RS24410 (C6Y56_24680) - 5367297..5367512 (-) 216 WP_007959584.1 hypothetical protein -
  C6Y56_RS24415 (C6Y56_24685) - 5367578..5368267 (-) 690 WP_169431960.1 energy-coupling factor ABC transporter permease -
  C6Y56_RS24420 (C6Y56_24690) - 5368264..5368731 (-) 468 WP_169431961.1 FAD/FMN-containing dehydrogenase -
  C6Y56_RS24425 (C6Y56_24695) - 5368862..5369488 (+) 627 WP_003228301.1 DUF1780 domain-containing protein -
  C6Y56_RS24430 (C6Y56_24700) - 5369485..5370012 (+) 528 WP_169431962.1 MOSC domain-containing protein -
  C6Y56_RS24435 (C6Y56_24705) - 5370069..5370242 (+) 174 WP_003228304.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44129.95 Da        Isoelectric Point: 10.1211

>NTDB_id=278135 C6Y56_RS24390 WP_169431957.1 5364382..5365599(+) (pilC) [Pseudomonas fluorescens strain G7]
MAVKAAKISVYAWEGTDRKGSRITGELSGQSPALIKAQLRKQGINPGKVRKKSASLMNFGKRIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIKKAMTYPTAVVLVAAVVTAILLVKVVPQFQSVFSGFGAELPAFTLMVIGLSEFMQQWWWAILGVLVAAFFGTR
HALKKSQALRDRRDAWLLKLPLVGTMMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVATGM
QLNFSMRTTGMFPNMAVQMTAIGEESGALDDMLDKVAGFYEEEVDNMVDNLTSLMEPFVMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=278135 C6Y56_RS24390 WP_169431957.1 5364382..5365599(+) (pilC) [Pseudomonas fluorescens strain G7]
ATGGCCGTCAAGGCAGCGAAAATCAGCGTCTACGCCTGGGAAGGCACGGACAGGAAAGGCAGCCGGATCACTGGCGAACT
GAGCGGACAAAGCCCCGCGCTGATCAAGGCACAGTTGCGCAAACAAGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCG
CGTCGTTGATGAACTTCGGCAAGCGCATCAAGCCTCTGGATATCGCCCTCTTCACCCGGCAAATGGCGACCATGATGAAG
GCCGGCGTGCCATTGCTGCAGTCGTTCGACATCATTGGCGAGGGCTTTGACAATCCGGCCATGCGCAAGCTGGTGGACGA
GGTCAAACAGGAAGTCGCCGCCGGTAACAGCTTCGCCGCGGCCCTGCGCAAGAAGCCGCAATACTTCGACGAGTTGTACT
GCAACCTGGTGGATGCCGGCGAGCAGTCCGGTGCCCTAGACACCCTGCTCGAACGTGTGGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCCACCGCCGTGGTTCTGGTAGCCGCGGTCGTCACCGCAAT
TCTGCTGGTGAAAGTGGTGCCGCAGTTCCAGTCGGTGTTTTCCGGCTTCGGTGCCGAACTGCCGGCGTTCACCCTGATGG
TGATCGGCCTGTCGGAATTCATGCAGCAATGGTGGTGGGCGATTCTCGGCGTGCTGGTCGCAGCTTTTTTCGGCACCCGC
CATGCTCTGAAGAAATCCCAGGCCCTGCGCGATCGCCGTGACGCCTGGCTGCTCAAGCTGCCGCTGGTGGGCACCATGAT
GTACAAGTCCGCCGTGGCCCGTTTCGCCCGGACCCTGTCGACCACCTTTGCCGCCGGCGTGCCGCTGGTCGAAGCGCTGG
ACTCGGTTGCCGGAGCCACCGGCAACGTGGTGTTCAAACGCGCGGTGCTGCGCATCCGCCAGGACGTGGCCACCGGTATG
CAGCTGAATTTCTCGATGCGCACCACCGGCATGTTTCCCAACATGGCGGTCCAGATGACCGCCATCGGCGAGGAGTCCGG
TGCTCTGGACGACATGCTCGACAAGGTTGCCGGGTTCTACGAGGAAGAAGTGGATAACATGGTCGACAACCTCACAAGCC
TCATGGAGCCTTTCGTCATGGTGGTACTCGGGGTGATCGTCGGCGGACTGGTGGTGGCCATGTATCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.309

100

0.753
  pilC Acinetobacter baylyi ADP1

58.333

100

0.588
  pilC Acinetobacter baumannii D1279779

58.333

100

0.588
  pilC Legionella pneumophila strain ERS1305867

54

98.765

0.533
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilG Neisseria gonorrhoeae MS11

42.68

99.506

0.425
  pilG Neisseria meningitidis 44/76-A

42.184

99.506

0.42
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.412
  pilC Thermus thermophilus HB27

38.653

99.012

0.383

Multiple sequence alignment