Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | C6Y56_RS24395 | Genome accession | NZ_CP027561 |
| Coordinates | 5365601..5366473 (+) | Length | 290 a.a. |
| NCBI ID | WP_169431958.1 | Uniprot ID | A0A7Z3C8M0 |
| Organism | Pseudomonas fluorescens strain G7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5360601..5371473
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6Y56_RS24370 (C6Y56_24640) | - | 5360892..5361188 (+) | 297 | WP_169431955.1 | DUF2845 domain-containing protein | - |
| C6Y56_RS24375 (C6Y56_24645) | - | 5361354..5361710 (-) | 357 | WP_065261581.1 | BON domain-containing protein | - |
| C6Y56_RS24380 (C6Y56_24650) | - | 5362009..5362452 (-) | 444 | WP_085732829.1 | pilin | - |
| C6Y56_RS24385 (C6Y56_24655) | pilB | 5362679..5364379 (+) | 1701 | WP_169431956.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| C6Y56_RS24390 (C6Y56_24660) | pilC | 5364382..5365599 (+) | 1218 | WP_169431957.1 | type II secretion system F family protein | Machinery gene |
| C6Y56_RS24395 (C6Y56_24665) | pilD | 5365601..5366473 (+) | 873 | WP_169431958.1 | A24 family peptidase | Machinery gene |
| C6Y56_RS24400 (C6Y56_24670) | coaE | 5366470..5367093 (+) | 624 | WP_169431959.1 | dephospho-CoA kinase | - |
| C6Y56_RS24405 (C6Y56_24675) | yacG | 5367090..5367290 (+) | 201 | WP_039771664.1 | DNA gyrase inhibitor YacG | - |
| C6Y56_RS24410 (C6Y56_24680) | - | 5367297..5367512 (-) | 216 | WP_007959584.1 | hypothetical protein | - |
| C6Y56_RS24415 (C6Y56_24685) | - | 5367578..5368267 (-) | 690 | WP_169431960.1 | energy-coupling factor ABC transporter permease | - |
| C6Y56_RS24420 (C6Y56_24690) | - | 5368264..5368731 (-) | 468 | WP_169431961.1 | FAD/FMN-containing dehydrogenase | - |
| C6Y56_RS24425 (C6Y56_24695) | - | 5368862..5369488 (+) | 627 | WP_003228301.1 | DUF1780 domain-containing protein | - |
| C6Y56_RS24430 (C6Y56_24700) | - | 5369485..5370012 (+) | 528 | WP_169431962.1 | MOSC domain-containing protein | - |
| C6Y56_RS24435 (C6Y56_24705) | - | 5370069..5370242 (+) | 174 | WP_003228304.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32396.74 Da Isoelectric Point: 7.7032
>NTDB_id=278136 C6Y56_RS24395 WP_169431958.1 5365601..5366473(+) (pilD) [Pseudomonas fluorescens strain G7]
MPIDELFALYPLAFVFTALILGLVVGSFLNVVIWRLPKMLEREWRQQAHDVLGLPVETPLPVYNLMLPHSQCPHCAHRIR
AWENIPLLSYVFLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHLGFSWPACLLIVLTWGLLTMSLIDIEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHDALWGAVAGYMALWSVFWLFKLFTGKDGIGHGDFKLLALLGAWGGWQILPLTVLLSSLVG
AVLGVILLKLRDRNTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
MPIDELFALYPLAFVFTALILGLVVGSFLNVVIWRLPKMLEREWRQQAHDVLGLPVETPLPVYNLMLPHSQCPHCAHRIR
AWENIPLLSYVFLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHLGFSWPACLLIVLTWGLLTMSLIDIEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHDALWGAVAGYMALWSVFWLFKLFTGKDGIGHGDFKLLALLGAWGGWQILPLTVLLSSLVG
AVLGVILLKLRDRNTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=278136 C6Y56_RS24395 WP_169431958.1 5365601..5366473(+) (pilD) [Pseudomonas fluorescens strain G7]
ATGCCCATCGACGAACTCTTCGCTCTCTATCCGCTGGCCTTTGTCTTCACCGCTCTGATACTCGGACTGGTGGTCGGCAG
CTTCCTCAATGTGGTGATCTGGCGTCTGCCAAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCTCACGATGTGCTTGGGC
TGCCTGTCGAAACACCGCTGCCGGTTTACAACCTGATGTTGCCGCACTCGCAGTGCCCGCATTGCGCCCACCGCATTCGT
GCGTGGGAAAACATCCCGCTGCTCAGCTACGTGTTTTTGCGCGGGCGCTGCTCGTCATGCGCGGCGCCGATCAGCAAGCG
TTATCCACTGACCGAACTGGCCTGCGGTCTGCTCTCGGCGTTCATCGCCTGGCATCTGGGCTTTAGCTGGCCGGCATGCC
TGCTGATCGTGTTGACCTGGGGCCTGCTGACGATGAGCCTGATCGATATCGAACATCAGCTGTTGCCCGACGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGCCTGTTCGTCTCGCTGCACGACGCGCTGTGGGGGGCAGT
AGCTGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGTTCACCGGCAAGGATGGCATCGGTCACGGCGACT
TCAAGCTGCTGGCACTGCTTGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCGTCCTGTTGTCCTCGTTGGTGGGA
GCGGTGCTGGGGGTGATTTTGCTCAAGTTGCGCGACCGGAATACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCCATCGACGAACTCTTCGCTCTCTATCCGCTGGCCTTTGTCTTCACCGCTCTGATACTCGGACTGGTGGTCGGCAG
CTTCCTCAATGTGGTGATCTGGCGTCTGCCAAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCTCACGATGTGCTTGGGC
TGCCTGTCGAAACACCGCTGCCGGTTTACAACCTGATGTTGCCGCACTCGCAGTGCCCGCATTGCGCCCACCGCATTCGT
GCGTGGGAAAACATCCCGCTGCTCAGCTACGTGTTTTTGCGCGGGCGCTGCTCGTCATGCGCGGCGCCGATCAGCAAGCG
TTATCCACTGACCGAACTGGCCTGCGGTCTGCTCTCGGCGTTCATCGCCTGGCATCTGGGCTTTAGCTGGCCGGCATGCC
TGCTGATCGTGTTGACCTGGGGCCTGCTGACGATGAGCCTGATCGATATCGAACATCAGCTGTTGCCCGACGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGCCTGTTCGTCTCGCTGCACGACGCGCTGTGGGGGGCAGT
AGCTGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGTTCACCGGCAAGGATGGCATCGGTCACGGCGACT
TCAAGCTGCTGGCACTGCTTGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCGTCCTGTTGTCCTCGTTGGTGGGA
GCGGTGCTGGGGGTGATTTTGCTCAAGTTGCGCGACCGGAATACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.546 |
97.241 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
51.418 |
97.241 |
0.5 |
| pilD | Acinetobacter baumannii D1279779 |
47.887 |
97.931 |
0.469 |
| pilD | Acinetobacter nosocomialis M2 |
47.887 |
97.931 |
0.469 |
| pilD | Neisseria gonorrhoeae MS11 |
47.778 |
93.103 |
0.445 |