Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   SPV_RS09895 Genome accession   NZ_CP027540
Coordinates   1842547..1843488 (-) Length   313 a.a.
NCBI ID   WP_000249564.1    Uniprot ID   Q8DN86
Organism   Streptococcus pneumoniae strain D39V     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1837547..1848488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPV_RS09855 (SPV_1854) comYH 1838033..1838986 (-) 954 WP_000345135.1 class I SAM-dependent methyltransferase Machinery gene
  SPV_RS09860 (SPV_2427) - 1839047..1839641 (-) 595 Protein_1837 class I SAM-dependent methyltransferase -
  SPV_RS09865 (SPV_1857) comGG/cglG 1839778..1840191 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPV_RS09870 (SPV_1858) comGF/cglF 1840169..1840630 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPV_RS09875 (SPV_1859) comGE/cglE 1840593..1840895 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPV_RS09880 (SPV_1860) comGD/cglD 1840858..1841262 (-) 405 WP_000588026.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPV_RS09885 (SPV_1861) comGC/cglC 1841255..1841581 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  SPV_RS09890 (SPV_1862) comGB/cglB 1841583..1842599 (-) 1017 WP_074196785.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPV_RS09895 (SPV_1863) comGA/cglA/cilD 1842547..1843488 (-) 942 WP_000249564.1 competence type IV pilus ATPase ComGA Machinery gene
  SPV_RS09900 (SPV_1864) - 1843564..1843929 (-) 366 WP_000286412.1 DUF1033 family protein -
  SPV_RS09905 (SPV_1865) - 1844080..1845138 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  SPV_RS09910 (SPV_1866) nagA 1845301..1846452 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -
  SPV_RS09915 (SPV_1867) - 1846605..1848422 (-) 1818 WP_001220853.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35555.47 Da        Isoelectric Point: 6.1330

>NTDB_id=277961 SPV_RS09895 WP_000249564.1 1842547..1843488(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain D39V]
MVQEIAQEIIRSARKKGTQDIYFVPKLDAYELHMRVGDERCKIGSYDFEKFAAVISHFKFVAGMNVGEKRRSQLGSCDYA
YDHKIASLRLSTVGDYRGHESLVIRLLHDEEQDLHFWFQDIEELGKQYRQRGLYLFAGPVGSGKTTLMHELSKSLFKGQQ
VMSIEDPVEIKQDDMLQLQLNEAIGLTYENLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIRGVY
ERLLELGVSEEELAVVLQGVCYQRLIGGGGIVDFASRDYQEHQAAKWNEQIDQLLKDGHITSLQAETEKISYS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=277961 SPV_RS09895 WP_000249564.1 1842547..1843488(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain D39V]
ATGGTTCAAGAAATTGCACAAGAAATCATTCGTTCAGCTCGGAAAAAAGGGACGCAGGATATCTATTTTGTCCCTAAGTT
AGACGCCTATGAGCTTCATATGAGGGTAGGAGACGAGCGCTGTAAAATTGGTAGCTATGATTTTGAAAAGTTTGCAGCCG
TTATCAGTCACTTTAAGTTTGTGGCGGGTATGAATGTGGGAGAAAAAAGACGTAGTCAACTGGGTTCCTGTGATTATGCC
TATGACCATAAGATAGCGTCTCTACGTTTATCTACTGTAGGCGATTATCGGGGGCATGAGAGTTTGGTTATCCGTTTGTT
GCACGATGAGGAGCAGGACCTGCATTTTTGGTTTCAGGATATTGAAGAATTAGGCAAGCAGTACAGGCAACGGGGACTCT
ATCTTTTTGCTGGTCCGGTTGGGAGTGGTAAGACGACCTTGATGCATGAATTGTCCAAGTCACTCTTTAAAGGACAGCAA
GTTATGTCCATCGAAGATCCTGTCGAAATCAAGCAGGACGACATGCTTCAGTTGCAGTTGAACGAAGCAATCGGCCTAAC
CTATGAAAATCTAATCAAACTTTCCTTGCGTCATCGACCAGATCTCTTGATTATCGGAGAAATTCGTGACAGCGAGACGG
CGCGTGCAGTGGTCAGAGCTAGTTTGACAGGTGCGACAGTCTTTTCAACCATTCACGCCAAGAGTATCCGAGGTGTTTAT
GAGCGTCTGCTGGAGTTGGGTGTGAGTGAAGAAGAATTGGCAGTTGTTCTGCAAGGAGTCTGCTACCAGAGATTAATCGG
GGGAGGAGGAATCGTTGACTTTGCAAGCAGAGATTATCAAGAACACCAAGCAGCCAAGTGGAATGAGCAAATTGACCAGC
TTCTTAAAGATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DN86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

100

100

1
  comGA/cglA/cilD Streptococcus pneumoniae D39

100

100

1
  comGA/cglA/cilD Streptococcus pneumoniae R6

100

100

1
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

100

100

1
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

95.847

100

0.958
  comYA Streptococcus gordonii str. Challis substr. CH1

78.065

99.042

0.773
  comYA Streptococcus mutans UA159

65.916

99.361

0.655
  comYA Streptococcus mutans UA140

65.916

99.361

0.655
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

62.581

99.042

0.62
  comGA Lactococcus lactis subsp. cremoris KW2

54.808

99.681

0.546
  comGA Latilactobacillus sakei subsp. sakei 23K

41.912

86.901

0.364

Multiple sequence alignment