Detailed information NTG0277958

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: SPV_RS09880
• Genome accession: NZ_CP027540
• Coordinates: 1840858..1841262 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588026.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain D39V
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1835858..1846262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPV_RS09845 (SPV_1851)	rnpA	1836272..1836643 (-)	372	WP_000739246.1	ribonuclease P protein component	-
SPV_RS11980 (SPV_1852)	-	1836660..1836791 (-)	132	WP_000768904.1	hypothetical protein	-
SPV_RS09850 (SPV_1853)	-	1836792..1837982 (-)	1191	WP_000167757.1	acetate kinase	-
SPV_RS09855 (SPV_1854)	comYH	1838033..1838986 (-)	954	WP_000345135.1	class I SAM-dependent methyltransferase	Machinery gene
SPV_RS09860 (SPV_2427)	-	1839047..1839641 (-)	595	Protein_1837	class I SAM-dependent methyltransferase	-
SPV_RS09865 (SPV_1857)	comGG/cglG	1839778..1840191 (-)	414	WP_000265622.1	competence type IV pilus minor pilin ComGG	Machinery gene
SPV_RS09870 (SPV_1858)	comGF/cglF	1840169..1840630 (-)	462	WP_000250534.1	competence type IV pilus minor pilin ComGF	Machinery gene
SPV_RS09875 (SPV_1859)	comGE/cglE	1840593..1840895 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
SPV_RS09880 (SPV_1860)	comGD/cglD	1840858..1841262 (-)	405	WP_000588026.1	competence type IV pilus minor pilin ComGD	Machinery gene
SPV_RS09885 (SPV_1861)	comGC/cglC	1841255..1841581 (-)	327	WP_000738626.1	comG operon protein ComGC	Machinery gene
SPV_RS09890 (SPV_1862)	comGB/cglB	1841583..1842599 (-)	1017	WP_074196785.1	competence type IV pilus assembly protein ComGB	Machinery gene
SPV_RS09895 (SPV_1863)	comGA/cglA/cilD	1842547..1843488 (-)	942	WP_000249564.1	competence type IV pilus ATPase ComGA	Machinery gene
SPV_RS09900 (SPV_1864)	-	1843564..1843929 (-)	366	WP_000286412.1	DUF1033 family protein	-
SPV_RS09905 (SPV_1865)	-	1844080..1845138 (-)	1059	WP_000649468.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14684.91 Da
• Isoelectric Point: 10.2164

>NTDB_id=277958 SPV_RS09880 WP_000588026.1 1840858..1841262(-) (comGD/cglD) [Streptococcus pneumoniae strain D39V]
MIKAFTMLESLLVLGLVSILALGLSGSVQSTFSAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQMISNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=277958 SPV_RS09880 WP_000588026.1 1840858..1841262(-) (comGD/cglD) [Streptococcus pneumoniae strain D39V]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGACTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTCCAGTCCACTTTTTCAGCGGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCTAGTCAACAAAAGACTAGTTTGAACTTGGATGGGCAGATGATTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae Rx1	100	100	1
comGD/cglD	Streptococcus pneumoniae D39	100	100	1
comGD/cglD	Streptococcus pneumoniae R6	100	100	1
comGD/cglD	Streptococcus pneumoniae TIGR4	97.761	100	0.978
comGD/cglD	Streptococcus mitis SK321	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.992	99.254	0.963
comYD	Streptococcus gordonii str. Challis substr. CH1	59.055	94.776	0.56
comYD	Streptococcus mutans UA140	49.219	95.522	0.47
comYD	Streptococcus mutans UA159	49.219	95.522	0.47