Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PC2016_RS14550 Genome accession   NZ_CP027523
Coordinates   3183122..3184351 (+) Length   409 a.a.
NCBI ID   WP_104643364.1    Uniprot ID   A0A2K4XCQ3
Organism   Pseudoalteromonas carrageenovora strain KCTC 22325     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3178122..3189351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PC2016_RS14525 (PC2016_2788) pdhR 3178383..3179132 (-) 750 WP_058549407.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  PC2016_RS14530 (PC2016_2789) ampE 3179540..3180391 (-) 852 WP_104643361.1 beta-lactamase regulator AmpE -
  PC2016_RS14535 (PC2016_2790) ampD 3180405..3180959 (-) 555 WP_104643362.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PC2016_RS14540 (PC2016_2791) nadC 3181199..3182050 (+) 852 WP_104643363.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PC2016_RS14545 (PC2016_2792) pilA/pilA1 3182549..3183001 (+) 453 WP_269459735.1 pilin Machinery gene
  PC2016_RS14550 (PC2016_2793) pilC 3183122..3184351 (+) 1230 WP_104643364.1 type II secretion system F family protein Machinery gene
  PC2016_RS14555 (PC2016_2794) pilD 3184569..3185462 (+) 894 WP_104643365.1 A24 family peptidase Machinery gene
  PC2016_RS14560 (PC2016_2795) coaE 3185464..3186105 (+) 642 WP_104643366.1 dephospho-CoA kinase -
  PC2016_RS14565 (PC2016_2796) pilB 3186232..3187908 (+) 1677 WP_131692482.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PC2016_RS14570 (PC2016_2797) yacG 3187967..3188197 (+) 231 WP_058549398.1 DNA gyrase inhibitor YacG -
  PC2016_RS14575 (PC2016_2798) - 3188271..3188762 (-) 492 WP_104643368.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44509.51 Da        Isoelectric Point: 9.8734

>NTDB_id=277681 PC2016_RS14550 WP_104643364.1 3183122..3184351(+) (pilC) [Pseudoalteromonas carrageenovora strain KCTC 22325]
MSKKQERKGLDTFSWIGVSARGKRLEGELTGNSVALVKAQLRKQGITPSKVKRKAKPLFGIQSVQKITPKDIALITRQIA
TMLMAGVPLIQSIEMIGSGSTNKSVTKLMETIGDEVKAGQPLNQALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALY
KEKSEALKSKIKKAMFYPIAVLIVALIVTSILLIFVVPQFQDIFEGFGAQLPAFTLFVIGISEFMQEYWWVALITIVAAG
WAFKEAKLRSLKLRDATDRTILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEV
SSGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIIAMYL
PIFQLGAVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=277681 PC2016_RS14550 WP_104643364.1 3183122..3184351(+) (pilC) [Pseudoalteromonas carrageenovora strain KCTC 22325]
ATGTCAAAAAAACAAGAAAGGAAAGGACTCGATACGTTTTCATGGATTGGTGTAAGCGCCAGAGGTAAGCGACTTGAAGG
TGAACTTACAGGTAATAGTGTTGCATTAGTCAAAGCACAACTTCGTAAACAAGGTATAACCCCCTCAAAAGTAAAACGTA
AAGCAAAACCACTGTTTGGTATTCAAAGTGTTCAAAAAATCACCCCTAAAGATATCGCGCTAATTACGCGTCAGATTGCA
ACTATGCTGATGGCGGGAGTGCCACTTATTCAATCAATTGAAATGATTGGTAGTGGCTCCACCAACAAAAGCGTTACTAA
GTTAATGGAAACGATAGGTGATGAAGTTAAAGCAGGTCAGCCACTTAACCAAGCGCTTAGAAAACACCCCCGTTATTTTG
ATGATTTATATTGCGATTTAGTAGCATCAGGCGAGCAATCCGGTGCGCTTGATAAAATATTTGACCGTGTTGCACTTTAT
AAAGAAAAGTCTGAAGCGCTGAAATCAAAAATTAAAAAAGCGATGTTCTACCCAATTGCAGTTTTGATTGTTGCACTTAT
TGTGACATCAATACTTCTTATATTTGTAGTGCCTCAATTTCAGGATATTTTTGAGGGGTTTGGCGCACAACTTCCCGCAT
TTACTCTATTTGTAATTGGTATATCTGAATTTATGCAGGAGTATTGGTGGGTAGCATTAATTACTATTGTTGCGGCCGGT
TGGGCTTTTAAAGAAGCCAAGCTCAGAAGTTTAAAACTCAGAGATGCAACCGACAGAACTATATTAAAACTGCCAGTAAT
TGGCATGATTTTAAATAAAGCAGCCGTTGCGCGTTATGCTCGTACGCTTTCTACAACCTTTGCAGCTGGTGTACCACTTG
TTGATGCGCTGGACTCAGCAGCAGGTGCATCCGGTAACGCAGTTTACCGCTATGCAATACTAGATATAAAAGCTGAGGTT
AGCTCTGGTAACCAAATGAACTGGGCAATGCGTAACTCTAAAATATTTCCTGATATGGTTATTCAAATGGTAGCGATTGG
CGAGGAGTCAGGCTCTTTAGATGGCATGCTTGCTAAAGTAGCCACTATTTATGAGCAAGAAGTTGATGATGCAGTAGACG
GCCTTTCAAGCTTACTAGAACCACTTATTATGGCTGTTCTCGGTGTGTTAGTTGGTGGCTTGATTATCGCAATGTACTTG
CCTATTTTCCAACTTGGCGCTGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K4XCQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.728

97.066

0.619
  pilC Acinetobacter baumannii D1279779

55.75

97.8

0.545
  pilC Acinetobacter baylyi ADP1

55.25

97.8

0.54
  pilC Legionella pneumophila strain ERS1305867

55

97.8

0.538
  pilC Vibrio cholerae strain A1552

43.284

98.289

0.425
  pilG Neisseria meningitidis 44/76-A

43.478

95.599

0.416
  pilG Neisseria gonorrhoeae MS11

43.223

95.599

0.413
  pilC Vibrio campbellii strain DS40M4

42.25

97.8

0.413

Multiple sequence alignment