Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C6Y16_RS12180 Genome accession   NZ_CP027497
Coordinates   2383989..2384408 (-) Length   139 a.a.
NCBI ID   WP_049142657.1    Uniprot ID   -
Organism   Enterococcus faecium strain AUSMDU00004167     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2378989..2389408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y16_RS17000 - 2379154..2380200 (-) 1047 WP_265094225.1 ABC transporter ATP-binding protein -
  C6Y16_RS12150 - 2380312..2381484 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  C6Y16_RS12160 - 2381792..2382286 (-) 495 WP_106913990.1 thioredoxin family protein -
  C6Y16_RS16880 - 2382683..2382865 (-) 183 WP_049142679.1 hypothetical protein -
  C6Y16_RS12170 - 2383170..2383601 (-) 432 WP_049142659.1 DNA/RNA non-specific endonuclease -
  C6Y16_RS12175 - 2383616..2383912 (-) 297 WP_049142658.1 hypothetical protein -
  C6Y16_RS12180 ssb 2383989..2384408 (-) 420 WP_049142657.1 single-stranded DNA-binding protein Machinery gene
  C6Y16_RS12185 - 2384463..2384804 (-) 342 WP_049142656.1 hypothetical protein -
  C6Y16_RS12190 - 2384876..2385142 (-) 267 WP_049142678.1 hypothetical protein -
  C6Y16_RS12195 - 2385629..2386540 (-) 912 WP_049142655.1 replication-relaxation family protein -
  C6Y16_RS12200 - 2387483..2387905 (-) 423 WP_049142654.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15682.65 Da        Isoelectric Point: 9.2337

>NTDB_id=277496 C6Y16_RS12180 WP_049142657.1 2383989..2384408(-) (ssb) [Enterococcus faecium strain AUSMDU00004167]
MMNSVNLVGRLTKEVDLKYTPKGNATGTFILAVNRNYTNANGEREADYIRCVIWRKAAETLAKYTGKGSLIGINGRLQTR
SYQNQQGQTMYVTEVLVTDFYLLESKEINEQRSKSMANNQNNSSIPGNEIQISDSYLPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=277496 C6Y16_RS12180 WP_049142657.1 2383989..2384408(-) (ssb) [Enterococcus faecium strain AUSMDU00004167]
ATGATGAATTCAGTGAATTTAGTAGGACGGTTAACAAAAGAAGTGGATTTAAAATACACACCAAAAGGCAATGCGACAGG
CACATTTATTTTAGCTGTTAATCGAAATTATACGAATGCAAACGGCGAGCGTGAAGCAGATTATATCCGCTGTGTCATTT
GGCGGAAAGCTGCGGAAACTTTAGCAAAATATACTGGAAAAGGAAGTTTGATTGGCATTAATGGACGTCTTCAAACGAGG
AGCTATCAGAATCAGCAAGGACAGACCATGTATGTTACGGAAGTTCTAGTGACAGATTTCTATTTGTTAGAGAGTAAAGA
AATCAATGAGCAACGGTCAAAATCAATGGCGAATAATCAAAATAATTCTTCAATTCCAGGAAATGAGATTCAAATTTCAG
ATAGTTATTTGCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.633
  ssbA Bacillus subtilis subsp. subtilis str. 168

43.023

100

0.532
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.604

100

0.446
  ssbB/cilA Streptococcus pneumoniae Rx1

43.885

100

0.439
  ssbB/cilA Streptococcus pneumoniae R6

43.885

100

0.439
  ssbB/cilA Streptococcus mitis NCTC 12261

43.885

100

0.439
  ssbB/cilA Streptococcus mitis SK321

43.885

100

0.439
  ssbB/cilA Streptococcus pneumoniae D39

43.885

100

0.439
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.717

76.259

0.417
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.007

100

0.41
  ssbA Streptococcus mutans UA159

41.007

100

0.41

Multiple sequence alignment