NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	D7H65_RS31350	Genome accession	NZ_CP032569
Coordinates	6591659..6592747 (+)	Length	362 a.a.
NCBI ID	WP_015502109.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain BA7823
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 6586659..6597747

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D7H65_RS31330 (D7H65_31360)	rsmB	6587554..6588858 (-)	1305	WP_023095007.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
D7H65_RS31335 (D7H65_31365)	fmt	6588855..6589799 (-)	945	WP_023095008.1	methionyl-tRNA formyltransferase	-
D7H65_RS31340 (D7H65_31370)	def	6589854..6590360 (-)	507	WP_003107059.1	peptide deformylase	-
D7H65_RS31345 (D7H65_31375)	tsaP	6590499..6591524 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
D7H65_RS31350 (D7H65_31380)	dprA	6591659..6592747 (+)	1089	WP_015502109.1	DNA-processing protein DprA	Machinery gene
D7H65_RS31355 (D7H65_31385)	-	6592788..6593345 (+)	558	WP_003097300.1	L-threonylcarbamoyladenylate synthase	-
D7H65_RS31360 (D7H65_31390)	-	6593355..6594332 (-)	978	WP_033991581.1	quinone oxidoreductase	-
D7H65_RS31365 (D7H65_31395)	hemF	6594523..6595440 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
D7H65_RS31370 (D7H65_31400)	aroE	6595498..6596322 (+)	825	WP_003097314.1	shikimate dehydrogenase	-
D7H65_RS31375 (D7H65_31405)	-	6596433..6597419 (+)	987	WP_003097316.1	phospholipase	-

Sequence

Protein

Download Length: 362 a.a. Molecular weight: 37729.28 Da Isoelectric Point: 7.0742

                                >NTDB_id=276898 D7H65_RS31350 WP_015502109.1 6591659..6592747(+) (dprA) [Pseudomonas aeruginosa strain BA7823]

MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR

RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA

AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS

GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPVQPLPHPLLALLRAAP

YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide

Download Length: 1089 bp

                                >NTDB_id=276898 D7H65_RS31350 WP_015502109.1 6591659..6592747(+) (dprA) [Pseudomonas aeruginosa strain BA7823]

ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGTCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT

GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG

CCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC

AGGCACCTGCTGATGTGGGATGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT

CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA

CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGAATCGATGGCGCC

GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG

CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGC

CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC

GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATCCCGGGCTCCATCCACCATCCCGG

CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG

GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGTGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC

TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA

CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio campbellii strain DS40M4	43.514	100	0.445
dprA	Vibrio cholerae strain A1552	42.781	100	0.442
dprA	Vibrio cholerae O1 biovar El Tor strain E7946	42.781	100	0.442
dprA	Legionella pneumophila strain ERS1305867	43.38	98.066	0.425
dprA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.09	97.79	0.412
dprA	Acinetobacter baumannii D1279779	37.569	100	0.376
dprA	Acinetobacter baumannii strain A118	38.177	96.961	0.37
dprA	Glaesserella parasuis strain SC1401	46.853	79.006	0.37
dprA	Neisseria gonorrhoeae strain FA1090	44.224	83.702	0.37
dprA	Neisseria gonorrhoeae MS11	43.894	83.702	0.367
dprA	Neisseria meningitidis MC58	45.704	80.387	0.367
dprA	Neisseria meningitidis strain C311	45.704	80.387	0.367

Detailed information NTG0276898