Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SSA_RS01220 Genome accession   NC_009009
Coordinates   210355..210750 (+) Length   131 a.a.
NCBI ID   WP_011836374.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 205355..215750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS01195 (SSA_0209) pepA 206662..207726 (-) 1065 WP_002903482.1 glutamyl aminopeptidase -
  SSA_RS01200 (SSA_0210) - 207897..208184 (+) 288 WP_002903480.1 DUF4651 domain-containing protein -
  SSA_RS01205 (SSA_0211) - 208181..208516 (+) 336 WP_002903478.1 thioredoxin family protein -
  SSA_RS01210 (SSA_0212) ytpR 208513..209139 (+) 627 WP_002903477.1 YtpR family tRNA-binding protein -
  SSA_RS01215 (SSA_0213) - 209638..210225 (-) 588 WP_011836373.1 hypothetical protein -
  SSA_RS01220 (SSA_0214) ssbB/cilA 210355..210750 (+) 396 WP_011836374.1 single-stranded DNA-binding protein Machinery gene
  SSA_RS01225 (SSA_0215) - 211031..212017 (+) 987 WP_002903471.1 substrate-binding domain-containing protein -
  SSA_RS01230 (SSA_0216) - 212017..213330 (+) 1314 WP_002907421.1 sensor histidine kinase -
  SSA_RS01235 (SSA_0217) - 213323..214006 (+) 684 WP_002896732.1 response regulator transcription factor -
  SSA_RS01240 (SSA_0218) - 214003..215286 (+) 1284 WP_002903469.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14683.52 Da        Isoelectric Point: 6.7246

>NTDB_id=27505 SSA_RS01220 WP_011836374.1 210355..210750(+) (ssbB/cilA) [Streptococcus sanguinis SK36]
MYNKVIVIGRLTATPELHKTANEKSVARATVAVNRRYKSQSGEREADFANVVVWGRLAETLASYASKGSLISLDGELRTR
RYEKEGATHYVTEVLCHSFQLLESRAQRALRENNSGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=27505 SSA_RS01220 WP_011836374.1 210355..210750(+) (ssbB/cilA) [Streptococcus sanguinis SK36]
ATGTATAATAAAGTAATTGTAATCGGCCGGCTGACGGCTACGCCTGAACTGCACAAGACTGCGAATGAAAAATCTGTGGC
CCGCGCAACGGTCGCGGTTAATCGTCGTTATAAATCTCAGAGTGGTGAGCGTGAAGCGGATTTTGCAAATGTCGTTGTCT
GGGGTCGTCTAGCTGAGACTTTAGCCAGCTATGCAAGTAAGGGCAGCTTGATTTCTCTGGATGGTGAGCTACGGACTCGT
CGCTATGAAAAGGAGGGGGCGACACATTATGTGACAGAGGTGCTCTGTCATAGCTTCCAGCTGCTGGAAAGTCGGGCCCA
GCGCGCTCTGCGTGAAAATAATAGCGGAGCTGATTTAGCAGATTTGGTGTTGGAAGAAGAGGAACTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae Rx1

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae D39

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae R6

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae TIGR4

82.443

100

0.824
  ssbB/cilA Streptococcus mitis SK321

81.679

100

0.817
  ssbB/cilA Streptococcus mitis NCTC 12261

80.916

100

0.809
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

60.36

84.733

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382

Multiple sequence alignment