Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FORC77_RS02930 | Genome accession | NZ_CP027030 |
| Coordinates | 594861..595286 (-) | Length | 141 a.a. |
| NCBI ID | WP_072608924.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain FORC_077 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 589861..600286
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC77_RS02910 (FORC77_0517) | coaE | 590321..590929 (-) | 609 | WP_039554617.1 | dephospho-CoA kinase | - |
| FORC77_RS02915 (FORC77_0518) | pilD | 590931..591800 (-) | 870 | WP_131069647.1 | A24 family peptidase | Machinery gene |
| FORC77_RS02920 (FORC77_0519) | pilC | 591894..593120 (-) | 1227 | WP_011079549.1 | type II secretion system F family protein | Machinery gene |
| FORC77_RS02925 (FORC77_0520) | pilB | 593168..594856 (-) | 1689 | WP_080538712.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC77_RS02930 (FORC77_0521) | pilA | 594861..595286 (-) | 426 | WP_072608924.1 | pilin | Machinery gene |
| FORC77_RS02935 (FORC77_0522) | nadC | 595509..596396 (-) | 888 | WP_072608923.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC77_RS02940 (FORC77_0523) | ampD | 596489..597061 (+) | 573 | WP_072608922.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FORC77_RS02945 (FORC77_0524) | pdhR | 597449..598216 (+) | 768 | WP_131069648.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14704.89 Da Isoelectric Point: 9.4539
>NTDB_id=274592 FORC77_RS02930 WP_072608924.1 594861..595286(-) (pilA) [Vibrio vulnificus strain FORC_077]
MKKLNKTKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAATALASITGHRTNVETYVLENGSFPSTSGALAIPT
SPIGVITYENPTSAAGDIKFSFNSSGVSPDIVSKHVTLSRTSAGGWSCATDVATDLKPKGC
MKKLNKTKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAATALASITGHRTNVETYVLENGSFPSTSGALAIPT
SPIGVITYENPTSAAGDIKFSFNSSGVSPDIVSKHVTLSRTSAGGWSCATDVATDLKPKGC
Nucleotide
Download Length: 426 bp
>NTDB_id=274592 FORC77_RS02930 WP_072608924.1 594861..595286(-) (pilA) [Vibrio vulnificus strain FORC_077]
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTGGTGGCGGTAATTGGCGT
GCTCGCAGCAATTGCAGTACCCCAGTATCAAAAATACGTTGCTAAAAGTGAAGCCGCAACCGCTCTAGCTTCGATAACAG
GTCACCGAACTAACGTTGAAACATATGTACTAGAAAATGGTTCTTTCCCATCAACTTCAGGCGCTCTAGCAATACCTACT
TCTCCTATCGGAGTTATTACATACGAAAACCCTACTAGTGCAGCTGGTGATATTAAATTTAGTTTCAACTCATCTGGGGT
TAGCCCAGACATCGTATCGAAACACGTGACACTTTCAAGAACTTCTGCTGGTGGTTGGTCATGTGCAACTGATGTGGCAA
CAGATCTAAAACCTAAAGGCTGTTAA
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTGGTGGCGGTAATTGGCGT
GCTCGCAGCAATTGCAGTACCCCAGTATCAAAAATACGTTGCTAAAAGTGAAGCCGCAACCGCTCTAGCTTCGATAACAG
GTCACCGAACTAACGTTGAAACATATGTACTAGAAAATGGTTCTTTCCCATCAACTTCAGGCGCTCTAGCAATACCTACT
TCTCCTATCGGAGTTATTACATACGAAAACCCTACTAGTGCAGCTGGTGATATTAAATTTAGTTTCAACTCATCTGGGGT
TAGCCCAGACATCGTATCGAAACACGTGACACTTTCAAGAACTTCTGCTGGTGGTTGGTCATGTGCAACTGATGTGGCAA
CAGATCTAAAACCTAAAGGCTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
46.358 |
100 |
0.496 |
| pilA | Vibrio cholerae C6706 |
46.358 |
100 |
0.496 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.358 |
100 |
0.496 |
| pilA | Pseudomonas aeruginosa PAK |
43.537 |
100 |
0.454 |
| pilA | Acinetobacter baumannii strain A118 |
43.704 |
95.745 |
0.418 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.143 |
99.291 |
0.418 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.537 |
95.035 |
0.404 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.416 |
97.163 |
0.383 |